PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23943
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 525aa    MW: 59451.2 Da    PI: 4.4951
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23943genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.4e-52201462128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                +pGfrFhPtdeelv++yLk+k+ gkkl++ +vi e+d+yk++P+dLp +  +k+++++w+fF++rd+ky++g r+nrat++gyW
  Tp57577_TGAC_v2_mRNA23943  20 MPGFRFHPTDEELVMYYLKRKICGKKLKF-NVICETDVYKWDPEDLPdQsFLKTGDRQWFFFCHRDRKYPNGGRSNRATRHGYW 102
                                69**************************9.99**************96347788999*************************** PP

                        NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                katgkd++v+  +++ vg+kktLvfy grap+ge+tdWvmhey++
  Tp57577_TGAC_v2_mRNA23943 103 KATGKDRNVIF-NSRSVGVKKTLVFYFGRAPSGERTDWVMHEYTM 146
                                ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-5814169IPR003441NAC domain
PROSITE profilePS5100553.28319169IPR003441NAC domain
PfamPF023651.5E-2721145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MGAVSESASA DAFSEVMSSM PGFRFHPTDE ELVMYYLKRK ICGKKLKFNV ICETDVYKWD  60
PEDLPDQSFL KTGDRQWFFF CHRDRKYPNG GRSNRATRHG YWKATGKDRN VIFNSRSVGV  120
KKTLVFYFGR APSGERTDWV MHEYTMDEEE LKRCHDVKEY YALYKVFKKS GPGPKNGEQY  180
GAPFKEEDWA DDNVVDFNVK AAQLEAPKAV LNPFTDQPQQ LAVVNPFTDQ QQPLFVDEID  240
EFFNGAFDIE PVLDQQQFNG YVDFPQVCDL QQSVVMGQFS EAMIFSEASG KLQSSGQHYD  300
AQFDFDFNHS ATSHLSEAPE VTSAPNIQSD EGLVFYEDGF LEINDLTEFE DGLSEFELYQ  360
DAEMFLGTAE ANQNVDEFWM HIERNTRSQT EDYTGSFSQT NPGVVCDSVS FPTESTENQR  420
STVEDVTTTS RFSSALWAFV DSIPTTPASA AENPLVNRAL NRMSSFSRVK INPTNIAAGI  480
ETTTMKRPGR KGFSFLFFPI LIALCAFLWI SIGNLRLLGR CISP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-482114617140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23943
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469571.10.0NAC domain-containing protein 17
TrEMBLA0A2K3N0370.0A0A2K3N037_TRIPR; NAC domain-containing protein (Fragment)
STRINGXP_004496404.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-133NAC domain containing protein 17