PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23136
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 423aa    MW: 47318.5 Da    PI: 9.4657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23136genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-057294123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ C k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA23136 72 FVCEVCQKGFQREQNLQLHRRGH 94
                               89*******************88 PP
2zf-C2H2130.0003148170123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC++C+k +  +s+ k H +t+
  Tp57577_TGAC_v2_mRNA23136 148 WKCEKCSKKYAVQSDWKAHSKTC 170
                                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.18E-77194No hitNo description
PROSITE profilePS5015710.8037294IPR007087Zinc finger, C2H2
SMARTSM003550.00777294IPR015880Zinc finger, C2H2-like
PfamPF121715.0E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM0035576113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.18E-7143168No hitNo description
SMARTSM00355140148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAASFSAASF FTITEEDQNL MNQQQNSSTP SSSTTPTAPP PQKKRRNQPG TPNPDAEVVA  60
LSPKSLMATN RFVCEVCQKG FQREQNLQLH RRGHNLPWKL KQKSNKEPKR KVYVCPEPTC  120
VHHDPSRALG DLTGIKKHYF RKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTKEYRCDCG  180
TLFSRRDSFI THRAFCDALA QESSRQPQLP NQITNTTSLN NSHLFGNISN ISLALSQIPQ  240
HQNDNNQSTE ILRFGNTRTS QFNQNILSTP PQQTLHTLPF NFTTQHQPNQ NYHNDHQSQT  300
FQGLISLSQL NNNNMFSENF NNEGTNNFFS ENSIMCDPNP NQTSPISPHM SATALLQKAS  360
QMGATSSTNN NNNNNNASSL LSTRDFLGVG QIVMRNMNGG GVGQRNMEAE KNGYFGVGGN  420
FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35144211370Zinc finger protein JACKDAW
5b3h_F6e-35144211370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23136
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024641575.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ8GYC11e-124IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A396JLF30.0A0A396JLF3_MEDTR; Putative transcription factor C2H2 family
STRINGAES599260.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-103C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]