PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19203
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 269aa    MW: 31653.5 Da    PI: 8.2063
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19203genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.3e-192269148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT eEd+ll+++vk++G g+W++++r  g++R +k+c++rw +yl
  Tp57577_TGAC_v2_mRNA19203 22 KGPWTSEEDKLLIEYVKLHGEGRWNSVSRLTGLRRNGKSCRLRWVNYL 69
                               79********************************************97 PP
2Myb_DNA-binding51.72.1e-1676119247
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                g  T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Tp57577_TGAC_v2_mRNA19203  76 GHITPQEETIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                                667******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8461769IPR017930Myb domain
SuperFamilySSF466894.87E-3019116IPR009057Homeodomain-like
SMARTSM007177.0E-162171IPR001005SANT/Myb domain
PfamPF002494.1E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-232376IPR009057Homeodomain-like
CDDcd001674.51E-112469No hitNo description
PROSITE profilePS5129424.61670124IPR017930Myb domain
SMARTSM007173.1E-1574122IPR001005SANT/Myb domain
PfamPF002492.2E-1475119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2477123IPR009057Homeodomain-like
CDDcd001676.64E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MYSGVMEGNT RWSVIEEDRW RKGPWTSEED KLLIEYVKLH GEGRWNSVSR LTGLRRNGKS  60
CRLRWVNYLR PDLKKGHITP QEETIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKTKSSSDD AEKAKKRSFK RQQQQQLKHQ QQHIQQQQFQ FNLDMKGIID LLLDENEYYN  180
VPSTSQETQE MVSMYADTPE QKGYFDSMVN DNNGNVYAQE SSNEEILWDG LWNLDDVLGN  240
SMQLMLQAKP ANVHNLVTPF CSYFLFNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271112416128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19203
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1448071e-137AC144807.23 Medicago truncatula clone mth2-9j13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590731.11e-147transcription repressor MYB6
TrEMBLA0A2K3N3G60.0A0A2K3N3G6_TRIPR; Transcription factor MYB 48-like protein
STRINGAES609821e-147(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.19e-72myb domain protein 305