PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18266 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22819.8 Da PI: 4.7934 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.6 | 4.4e-43 | 37 | 136 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrr+Ca++C+lapyfp +qp+kf +h++FGasn++k+l++lpe+er da++s+vyeA ar+rdPvyG++g+i +lq Tp57577_TGAC_v2_mRNA18266 37 PCAACKILRRRCAEKCMLAPYFPPTQPSKFTTAHRVFGASNIIKILQELPESERADAVNSMVYEASARIRDPVYGCAGTICHLQ 120 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 +q+++l+a+la+ ++e Tp57577_TGAC_v2_mRNA18266 121 KQVNELQAQLAKSQAE 136 ***********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.323 | 36 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-43 | 37 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MENVTNKITN TSISSPLFFN SSTSSQPTLV PQVVMSPCAA CKILRRRCAE KCMLAPYFPP 60 TQPSKFTTAH RVFGASNIIK ILQELPESER ADAVNSMVYE ASARIRDPVY GCAGTICHLQ 120 KQVNELQAQL AKSQAELINM QLQQSNLLSL IYMEMNETPN ESSPQESVDN FISSPNYSSD 180 YQNNLNFFEE NTNPNLLWEP LWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-41 | 36 | 139 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-41 | 36 | 139 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18266 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC192352 | 1e-126 | AC192352.2 Medicago truncatula chromosome 2 BAC clone mte1-82k18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597159.1 | 1e-119 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 8e-79 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | G7IKN3 | 1e-118 | G7IKN3_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AES67410 | 1e-119 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-70 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18266 |