PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17081
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 794aa    MW: 88958.3 Da    PI: 4.8565
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17081genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.2e-07338356625
                                -SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                                C ffa+ G+C +G++C+F H
  Tp57577_TGAC_v2_mRNA17081 338 CAFFAQ-GWCIRGSSCSFLH 356
                                999***.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.31E-5332356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.357332359IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5338356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
LQRRNSRGGR RRGGRGXXXX XXXXXEEEEE EEEEELQQEE EEEGKEKEEA IVMEEEEEQE  60
TVVEEKDKDK DEVPDSLPNA DKHSKEIVKV EEEEKEAIKT EEEEEQETAI EEEEPETAVE  120
EKDKDKDEVP DSLPDADKYS KDSSQHMELD EKEDNLGSVS SVPENPEVIR PEHDMDGNDA  180
MLKASVPSHE ELTLKKEEFP LKQEVSSPPK PSENLIPAED GKNQGLNVDV ENSGHLQRKI  240
FEGCSEPDCN TKVSLSDVKD MDFRATKSSS DTGKDAVTGV TPRGNFVEDA DGGQNSQEKI  300
MQSETEPRVD VKQKQSRIRS LSPSAAIKDG NKRPAITCAF FAQGWCIRGS SCSFLHIKDS  360
VNNTDQGVEG DLVTAHQKRE LKLEKGVKEN VDRSRTNEGE ASPSWHSSRE KEKFPMRDSL  420
FPENRSAFNT SNNYFGSNLS SFSSREEGMA AIRNHHMYRG YTSREDFSSS LGASALDSQK  480
LLNSEKEYHT HKSSFSSDWE DLHRVGSSRV PPHANGYKLK TGSHDWEPSV PFRPSFFITS  540
MNVSSPGDLY DPLRDSVEIP NIGDGSLKAF LIRGSSIQAS SQVRTYDDSA AGGKHMSDLN  600
DEKSSVSSHN KIYENEPNRS SVPRGNDSLA TKTEITSGTC ANYHNGNIGV GRHAFGAEDR  660
TETVKKRTEP DAMHHGDGSE HRKKKVAKDN KIQEMEVDFP TDSSVHKETK ALKFFRPTLV  720
DLVKELLKPF WHEGRVSKDA HVLIVKKSVD KVISTLEPHQ IPTTEDTAKQ YVSSCRQKIA  780
KLVQGYVNKY SKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1664684KKRTEPDAMHHGDGSEHRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17081
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1468550.0AC146855.5 Medicago truncatula clone mth2-16c23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462525.10.0ABC transporter F family member 4 isoform X2
TrEMBLA0A2K3N1K50.0A0A2K3N1K5_TRIPR; Zinc finger CCCH domain-containing protein 27-like
STRINGAES638740.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-46C3H family protein