PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA16475

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 200aa MW: 23353.8 Da PI: 6.3968

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA16475	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.8	1.5e-15	89	141	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++ rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ +++ + Tp57577_TGAC_v2_mRNA16475 89 RKHRRMISNRESARRSRMRKQKHLDELWSQVLWLRNENHQLIEKLNHVSENHD 141 578*******************************************9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-13	85	149	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	87	150	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.2E-11	89	161	No hit	No description
Pfam	PF00170	3.6E-13	89	146	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.31E-13	89	139	No hit	No description
CDD	cd14702	1.09E-17	90	141	No hit	No description
PROSITE pattern	PS00036	0	92	107	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MQTREVTTGL NYMLPSNTSP YLQNYNNMIQ NNNISSYQLQ KFSNQLFGNY QNTPNQFHDF 60 NYSPQSSCIS SNSTSDEADE QNLSLINERK HRRMISNRES ARRSRMRKQK HLDELWSQVL 120 WLRNENHQLI EKLNHVSENH DQVVQENGKL KEEALELRQM IRDMQIHSPL IPSFSPLDDT 180 YLRDDSSNNS ISSSMDLLG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	108	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA16475

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146721	0.0	AC146721.7 Medicago truncatula clone mth2-145n10, complete sequence.
GenBank	BT146028	0.0	BT146028.1 Medicago truncatula clone JCVI-FLMt-7A22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013451170.1	1e-110	basic leucine zipper 43
Swissprot	Q9FMC2	2e-40	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	G7ZV06	1e-108	G7ZV06_MEDTR; BZIP transcription factor
STRING	AES83044	1e-109	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	7e-50	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA16475

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]