PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA16283 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 477aa MW: 53251.9 Da PI: 8.3511 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.9 | 1.8e-18 | 32 | 110 | 13 | 97 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++l lpk+f ++ + k+ + +l+ +sg +W+++l + ++g +++ +GW++Fvk++ Lke+Df+vFk++g+s f + + Tp57577_TGAC_v2_mRNA16283 32 DQQLALPKTFSNNVK--KKLPENAVLKGPSGVVWDIEL--TTRDGIVYFMNGWQQFVKDHSLKENDFLVFKYNGESLF--EILI 109 4679******85554..458889***************..99999999999*********************998888..6666 PP E CS B3 97 f 97 f Tp57577_TGAC_v2_mRNA16283 110 F 110 6 PP | |||||||
2 | B3 | 35.6 | 1.7e-11 | 322 | 403 | 3 | 87 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++ ps+v k+ l++p+k + +h ++ +s++++l+ ++W ++ y + ++ lt+GWk F+ +n+L+e D+++Fk g Tp57577_TGAC_v2_mRNA16283 322 VTMRPSHVYKRFFLSFPNKWILNHLSP--SSQDVILRM-GKNEWLGRYLYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAG 402 5789*****************999655..566788776.779********77777778***********************766 PP S CS B3 87 r 87 + Tp57577_TGAC_v2_mRNA16283 403 H 403 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-22 | 19 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.453 | 20 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.65E-19 | 22 | 111 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-21 | 22 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.7E-16 | 23 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-15 | 32 | 110 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-16 | 319 | 415 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.206 | 320 | 418 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-6 | 320 | 413 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.08E-14 | 321 | 406 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.1E-10 | 322 | 403 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.62E-15 | 323 | 416 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MVGGGCRSWE EDIYWTHFQF IHFTQFLRND FDQQLALPKT FSNNVKKKLP ENAVLKGPSG 60 VVWDIELTTR DGIVYFMNGW QQFVKDHSLK ENDFLVFKYN GESLFEILIF DGESFCEKAA 120 SYFVRKCGRA AANTEQETAN TEQGVGCSSK KKDTDNSVEE VNTPSNGVDE GVSPEKSSHL 180 NSIRVPFAVP VETTNGKTSN GGVESASPEQ FIADVVTETE PADAATQKTS KRTRRPVYTS 240 APSKKRGRPP GRPPKTSNPD ERALNWVTDA EISPKGSPKG SPKGRSATQE LYTSNRRPVT 300 KTEIENTLQL AQAACTDESL LVTMRPSHVY KRFFLSFPNK WILNHLSPSS QDVILRMGKN 360 EWLGRYLYHN IRNNGGLTGG WKYFALDNNL EEFDVCLFKP AGHMHDLLIL EMSIFRVVEE 420 ITPLAAVHSP GKKRGVKRTP PGATQKEHEF IEGKKRGVKR TLTNGVQTEL ESIEGA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA16283 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT053626 | 1e-172 | BT053626.1 Medicago truncatula clone MTYFT1G-O-17 unknown mRNA. | |||
GenBank | BT142610 | 1e-172 | BT142610.1 Medicago truncatula clone JCVI-FLMt-21M9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499104.2 | 0.0 | B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A2K3PAK2 | 0.0 | A0A2K3PAK2_TRIPR; B3 domain-containing protein (Fragment) | ||||
STRING | AES59536 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-43 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA16283 |