PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15137
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 357aa    MW: 39789.2 Da    PI: 7.5458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15137genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.6e-113460127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                               ++++ C+++ +tG C++G++C+F+H+p
  Tp57577_TGAC_v2_mRNA15137 34 PGEPDCSYYIKTGLCRFGSTCRFNHPP 60
                               5789*********************97 PP
2zf-CCCH40.35.4e-1381105327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                +++C+++++tGtCk+G +CkF+H++
  Tp57577_TGAC_v2_mRNA15137  81 QPECQYYMKTGTCKFGVTCKFHHPR 105
                                799********************96 PP
3zf-CCCH39.21.2e-12127151327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                +++C++++rtG+C++G++CkF+H++
  Tp57577_TGAC_v2_mRNA15137 127 EAECSYYLRTGECQFGNTCKFHHPQ 151
                                789********************97 PP
4zf-CCCH34.73e-11217243127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +++++C+f+++tG Ck+G+ C+F+H++
  Tp57577_TGAC_v2_mRNA15137 217 PGQPECQFYMKTGDCKFGAGCRFHHPR 243
                                5789*********************96 PP
5zf-CCCH36.11.1e-11265291127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++ C f++r+G+Ck+G++CkF+H++
  Tp57577_TGAC_v2_mRNA15137 265 PGEPMCVFYSRYGICKFGPSCKFNHPM 291
                                57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8493361IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-53360IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-83560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-53861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-43959IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.40878106IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-678105IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-1081105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-682107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-584106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802124152IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5124151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6126152IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10127151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4130150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216216244IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4216243IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8218243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6220245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4222243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643264292IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6264291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6267291IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-8269291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4269289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEYHPIIPIS QGSMWMMKLR PSETMNSESY PQRPGEPDCS YYIKTGLCRF GSTCRFNHPP  60
NRKLAIVSAR TIGEFPERIG QPECQYYMKT GTCKFGVTCK FHHPRDQAEI SGRVALNTLG  120
YPLRPNEAEC SYYLRTGECQ FGNTCKFHHP QPSNMMLSLR SSPIYPTLHS PTSSYLPSSY  180
TPLIMPGWSA YSGQMGSMIS TPPASPLQRG NIFPERPGQP ECQFYMKTGD CKFGAGCRFH  240
HPRQRLLIPA SPDCLLSPMG LPLRPGEPMC VFYSRYGICK FGPSCKFNHP MGIFSYNISA  300
SPSVDATDRC LLGSSSATAT LLEESSSSKP TRLSISETRQ VPSDDDDDDD DIDEDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15137
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495537.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-173ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K3MQ150.0A0A2K3MQ15_TRIPR; Zinc finger CCCH domain-containing protein zfn-like
STRINGXP_004495537.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-137zinc finger protein 1