PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1440
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 389aa    MW: 44962.3 Da    PI: 8.1958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1440genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-066586223
                              EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                              +C+ Cg sF+ + +L +H+++H
  Tp57577_TGAC_v2_mRNA1440 65 TCEECGASFKKHAYLLQHMQSH 86
                              6*******************99 PP
2zf-C2H217.31.3e-05109133123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               ++C+  dC+ s++rk++L+rH+  H
  Tp57577_TGAC_v2_mRNA1440 109 FVCSleDCKASYRRKDHLNRHLLQH 133
                               89*******************9887 PP
3zf-C2H216.13.2e-05138163123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               ++Cp  +C+  Fs +snLkrH    H
  Tp57577_TGAC_v2_mRNA1440 138 FQCPveNCKSGFSLQSNLKRHVEEiH 163
                               89*******************98777 PP
4zf-C2H221.27.9e-07179203123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               ++Cp   Cgk+F+  s+L++H  +H
  Tp57577_TGAC_v2_mRNA1440 179 FVCPeiGCGKVFRYASQLRKHEDSH 203
                               89*******************9888 PP
5zf-C2H217.98.7e-06269294123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               +kC+   C+ +Fs+ksnL++H++  H
  Tp57577_TGAC_v2_mRNA1440 269 FKCEfkGCDCTFSTKSNLHTHQKAvH 294
                               89********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355381942IPR015880Zinc finger, C2H2-like
SMARTSM003550.0116486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.786491IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-565109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576675.61E-6107135No hitNo description
SMARTSM003550.0063109133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91109138IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-9110135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280111133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-6136164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.43E-6136164No hitNo description
SMARTSM003550.02138163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242138168IPR007087Zinc finger, C2H2
PROSITE patternPS000280140163IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-5170204No hitNo description
Gene3DG3DSA:3.30.160.603.7E-8175203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.7E-4179203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.136179208IPR007087Zinc finger, C2H2
PROSITE patternPS000280181203IPR007087Zinc finger, C2H2
SMARTSM003550.18211236IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-4212236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280213236IPR007087Zinc finger, C2H2
SMARTSM0035515239260IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.33E-10250308No hitNo description
Gene3DG3DSA:3.30.160.601.5E-7250291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.424269299IPR007087Zinc finger, C2H2
SMARTSM003550.0047269294IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280271294IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-4293323IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559300326IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280302326IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEETLQSDEI PKFRDIRRYY CQYCGICRSK KTLITSHVNS EHKEEVEKAR VESEPDAEGA  60
LKSNTCEECG ASFKKHAYLL QHMQSHSLEE SNLLDTKMIY KIIDIIRPFV CSLEDCKASY  120
RRKDHLNRHL LQHQGKTFQC PVENCKSGFS LQSNLKRHVE EIHDENSTPI RSDENQKQFV  180
CPEIGCGKVF RYASQLRKHE DSHVKLDTVE VVCLEPGCMK VFTNAECLRA HVKSCHQYVT  240
CDTCGTKQLK KNMKRHLRTH ETSTSLEPFK CEFKGCDCTF STKSNLHTHQ KAVHFQVKPF  300
VCGFPNCGMR FAYKHVRDNH EKTAKHVFTL GDFEETDEQF RSRPRGGLKR KCPTVEMLVR  360
KRVTPPSQLE NLLFMQHCEQ DGSYSTLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A9e-165832316183Aart
2i13_B9e-165832316183Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248254LKKNMKR
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221631e-112AC122163.20 Medicago truncatula clone mth2-16l2, complete sequence.
GenBankAC1260061e-112AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635969.10.0LOW QUALITY PROTEIN: transcription factor IIIA-like
SwissprotQ84MZ41e-142TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2Z6M9M50.0A0A2Z6M9M5_TRISU; Uncharacterized protein
STRINGXP_004498336.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-144transcription factor IIIA