PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13410
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 306aa    MW: 32871 Da    PI: 9.1639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13410genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W++eEd++l++++k  G g+W++ ++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA13410 14 KGAWSKEEDDRLIKYIKDNGEGCWRSLPKAAGLARCGKSCRLRWINYL 61
                               79********************************************97 PP
2Myb_DNA-binding57.62.8e-1867111147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg++T++Edel++++++  G++ W++Ia++++ gRt++++k++w+++
  Tp57577_TGAC_v2_mRNA13410  67 RGNFTPDEDELIINLHTSVGNK-WSLIAQKLP-GRTDNEIKNYWNTH 111
                                89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.275961IPR017930Myb domain
SuperFamilySSF466892.86E-2812108IPR009057Homeodomain-like
SMARTSM007175.2E-121363IPR001005SANT/Myb domain
PfamPF002492.8E-141461IPR001005SANT/Myb domain
CDDcd001671.29E-101661No hitNo description
PROSITE profilePS5129427.89362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2865116IPR009057Homeodomain-like
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1567111IPR001005SANT/Myb domain
CDDcd001679.79E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRSPCCEKQ HTNKGAWSKE EDDRLIKYIK DNGEGCWRSL PKAAGLARCG KSCRLRWINY  60
LRPDLKRGNF TPDEDELIIN LHTSVGNKWS LIAQKLPGRT DNEIKNYWNT HIKRKLQSCG  120
IDPSTHRPFK RMADTVAGAS TSSTTTASPA ATATPLPSVP AGNENSSSSS ISRNKIKSEF  180
PLFSTTTSPS LKQKFVVTDS GNGGGVEDSV SNTSSGVTVE EIAYPPPPPQ INLELSLAPP  240
SSSQQLQNGC LCRQTLGLQN GGNHPCRCNN TIPIVGVSNV ASSSAATTGA GYCYFKYFGA  300
GILKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630424.11e-114myb-related protein 308
TrEMBLA0A2K3LCQ50.0A0A2K3LCQ5_TRIPR; MYB-related protein 308-like protein
STRINGAET049001e-114(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.13e-78myb domain protein 7