PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13183
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 338aa    MW: 38563.6 Da    PI: 6.1367
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13183genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg W++eEde+l+ +++ +G g+W+ ++ + g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA13183 14 RGLWSPEEDEKLITYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYL 61
                               788*******************************************97 PP
2Myb_DNA-binding54.13.6e-1767111147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rgr+T++E++l++ +++  G++ W+ Ia++++ gRt++++k++w+++
  Tp57577_TGAC_v2_mRNA13183  67 RGRFTPDEEKLIISLHNVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                                89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24664IPR009057Homeodomain-like
PROSITE profilePS5129416.657961IPR017930Myb domain
SuperFamilySSF466897.34E-3011108IPR009057Homeodomain-like
SMARTSM007178.1E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-141461IPR001005SANT/Myb domain
CDDcd001677.11E-111761No hitNo description
PROSITE profilePS5129425.08962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2565116IPR009057Homeodomain-like
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002497.1E-1667111IPR001005SANT/Myb domain
CDDcd001673.11E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLITYIT THGYGCWSEV PDKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPDEEKLIIS LHNVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKHN  120
SASNSSTTTN INTQNHVLDF TSNNIKLDHF ANQDQNVTTA KPISSFQETT LFSPTCPLFM  180
FEPNSLLLHG SATTEGNNNN NHNLQTDQYF QDSVNLISSE TWNQVQSSVS SLPPPISSTT  240
SFSMDTMNIN YLPPLIENVE NMEEESCFDH QRQEMNNIND EWHQQQQCPN NNINNFLFWD  300
NMVHGNDQLG GEEQLAPNST NMGTNTITLS PFPSSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13183
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948201e-119BT094820.1 Soybean clone JCVI-FLGm-19C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447096.11e-161transcription repressor MYB6
TrEMBLA0A072TW591e-160A0A072TW59_MEDTR; Myb transcription factor
STRINGXP_004503677.11e-133(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.15e-83myb domain protein 103