PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12622
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 731aa    MW: 78635.6 Da    PI: 6.3261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12622genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07309329526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C++f++ G C++Gd C +aHg
  Tp57577_TGAC_v2_mRNA12622 309 PCPDFRK-GACRRGDMCEYAHG 329
                                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.0E-1937170IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1839171IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-1086158IPR020683Ankyrin repeat-containing domain
SMARTSM002480.009290120IPR002110Ankyrin repeat
PROSITE profilePS5029718.21890197IPR020683Ankyrin repeat-containing domain
PRINTSPR014154.7E-591106IPR002110Ankyrin repeat
CDDcd002046.27E-1592197No hitNo description
PROSITE profilePS5008812.102125160IPR002110Ankyrin repeat
SMARTSM002480.0015125157IPR002110Ankyrin repeat
PRINTSPR014154.7E-5144158IPR002110Ankyrin repeat
SMARTSM003564.0E-6304330IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5309329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582309331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4309331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035625339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MCGGPDKSKS LSTSSSPSSS SSSAVEVSNN VKDMKNLTVR TDDSFSSLLE FASNNDFEEF  60
KVALDSDASL INEVGLWYVR QNGSKQIVLE HRTPLMVAAS YGSIDILKLI LSCPEADVNF  120
SCGTDKGTAL HCAASGGSVN AVDAVKLLLS AGADINCVDA NGNRPVDVIV VPPKLGGVKT  180
ILEELLSDSA SDGSVDDCSL PASVNSSSPR SAAPFSSNEN GSPSSPGATP KFTDTAANFT  240
SEKKEYPIDP SLPDIKNSIY ATDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH  360
ITEELRPLYV STGSAVPSPR SAASAANVMD MAAAMSLFPS SPSSISSMSP SPFAQPLSPS  420
ANGMSHSNNA WPQPNVPALH LPGSNVQTSR LRSSLSARDM PLDDFNNMLQ DFDGQQHILN  480
DLSCFSQPRP GAISVGRSGR SKALTPSNLE DLFCAEISSS PRYSDPAAAS VFSPTHKSAV  540
FNQFQQLQSS LSPINTNVMS PKNVEHPLFH QASYGVSSPG RMSPRSMEPL SPMSSRLSAF  600
AQREMQQQQM RSLSSRELGA NNPVSAVGSP GNSWSKWGSP TGKADWSVNG HEFGRSPRST  660
SFEHGNNGQE PDLSWVHSLV KESPPEIKEK LAASGPIAST DPNSNPQVES IDHSVLGAWL  720
EQMQLDQLVV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12622
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499884.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2K3PJC70.0A0A2K3PJC7_TRIPR; Zinc finger CCCH domain-containing protein 30-like
STRINGXP_004499884.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]