PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11933
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 319aa    MW: 35250.7 Da    PI: 8.3796
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11933genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.3e-19223256134
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Tp57577_TGAC_v2_mRNA11933 223 CTHCEVTKTPQWREGPKGPKTLCNACGVRYRSGR 256
                                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.7E-17217267IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-14217277No hitNo description
PROSITE profilePS5011411.846221253IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-15221254IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.90E-16222269No hitNo description
PfamPF003204.1E-17223256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPEDIPNMKD SWFFDKNFNG LEDEVFDDVL QFFDFPLEDV ETNPVEEDWS ALGEPCFDVF  60
PEPPVGLCAK PKIENPQLGN GFSAPCNEIS PMIKVPRTAG PAYGKTLPNN GSFFEKKVVL  120
QYSPVSVFEG SSASSGENSS FDLPVIPVKR PRSKRRRPSS SNPVFSLSFI ANPSAFQKYL  180
KTPASDSDLN RVKKQRKKDD SVLSGDAETK RSSSQESAII RKCTHCEVTK TPQWREGPKG  240
PKTLCNACGV RYRSGRLYPE YRPANSPTYV ESVHSNCHKK VLEMRGVVVK EGVRGRSMLA  300
SSTLSGNSVG QQHSHGSY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11933
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597258.11e-166GATA transcription factor 11
TrEMBLA0A2K3N2Y90.0A0A2K3N2Y9_TRIPR; GATA transcription factor 11-like protein
STRINGAES675091e-165(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-41GATA transcription factor 11