PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 27199.6 Da PI: 9.29 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.2 | 3.5e-12 | 117 | 158 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+f + eeAa+++++a+ Tp57577_TGAC_v2_mRNA11544 117 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTFASQEEAARLYDRAAF 158 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.401 | 101 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-7 | 116 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-6 | 116 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-10 | 117 | 161 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.42E-11 | 118 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-8 | 119 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVSLRRRRLL GLCSGNNSFV TPLPLYCENL ARFENSSQNA NPKSEQSVVS DIVSVVLDST 60 GTQNSQNTVV KDESGSSDVS GSSPSKEQPS QQSIGPPVKR RKRHSRKHRE NQEPCLMRGV 120 YFKNMKWQAA IKVDKKQIHL GTFASQEEAA RLYDRAAFMC GREPNFELSE EEKRELSKFK 180 WEEFLTKTRQ TITCKKHKKS RSPGLVEVEP SSNGVDCGGK QIVTDFSVSG EAEQEIDVSR 240 NL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11544 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013444108.1 | 1e-127 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024627868.1 | 1e-127 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024627869.1 | 1e-127 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024627870.1 | 1e-127 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Swissprot | Q56XP9 | 2e-50 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A2K3MN65 | 1e-178 | A0A2K3MN65_TRIPR; Ethylene-responsive transcription factor-like protein at4g13040-like protein | ||||
STRING | XP_004510251.1 | 1e-103 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5457 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 1e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11544 |