PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA10847 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | G2-like | ||||||||
Protein Properties | Length: 423aa MW: 46940 Da PI: 6.7089 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.3 | 8.4e-34 | 49 | 103 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Tp57577_TGAC_v2_mRNA10847 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.268 | 46 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-32 | 47 | 104 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.33E-17 | 48 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-25 | 49 | 104 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-9 | 51 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.5E-23 | 136 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MYHPTNVPDL SLIGSNSLVH GQHIDSGRST MDPGNGGNSL ANNSNVNSKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDEGKKADK 120 KETGDMLSNL DGSSGMQITE ALKLQMEVQK RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ 180 QRLSGVLSPG SGVAAPTPGD VCQQELDNKT EPATPDPEKA AKEHAPAKSL SVESFSSHHE 240 PMTPDSGCQV GSPADSPNGE RSTKKQRVSV EGGAPLXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 360 XXXXXXXXXX XXXXXXXXXX ESSMPSXXXQ TTVFLTHDHF DPSLGMSTRS GEEFDKLGVG 420 NM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA10847 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143618 | 0.0 | BT143618.1 Medicago truncatula clone JCVI-FLMt-6M11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486394.1 | 1e-180 | myb family transcription factor PHL7 | ||||
Refseq | XP_004486395.1 | 1e-180 | myb family transcription factor PHL7 | ||||
Refseq | XP_012569914.1 | 1e-180 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 1e-110 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2K3P3P7 | 0.0 | A0A2K3P3P7_TRIPR; Two-component response regulator EHD1 | ||||
STRING | XP_004486394.1 | 1e-180 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8610 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-89 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA10847 |