PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g22040
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 282aa    MW: 32753 Da    PI: 5.6101
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g22040genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.4e-10158243382
                EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                k+lt+sdv +s+ l lpk+ +++          +++++k + ++ ++g++ e+k+ ++  ++   lt+GW++Fv + +Lk   Dfv++
  Tp4g22040 158 KQLTKSDVEQSK-LALPKSQVSKKflhlleePDIPRGKKGIPVYGPNGKVHEMKM-WSDEKNPPDLTTGWRKFVGDYELKkCCDFVTI 243
                99********98.********999****999666778889***************.555555599**************944677765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-10152250IPR015300DNA-binding pseudobarrel domain
CDDcd100173.07E-12156256No hitNo description
SuperFamilySSF1019361.53E-11156255IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASSKKGTIS LRLEDEEGHL KEEIDLNKEP KLDQADLNRE AERDDDATHE EEADEDKIVA  60
SESAISEEAE TKKKKKMESE YEDVNQEEDD VYLKKRVKAF AVEREGTKKR KTETRDEEVD  120
DDSEQTLRLL SRWETPETPP KNIVPIHLIE QCTRPIRKQL TKSDVEQSKL ALPKSQVSKK  180
FLHLLEEPDI PRGKKGIPVY GPNGKVHEMK MWSDEKNPPD LTTGWRKFVG DYELKKCCDF  240
VTIWMFRNRV TRQICLAVDA KRFSFKKQVS KRISKAAFEN SD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193110KKRVKAFAVEREGTKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g22040
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3P5ZCH42e-71A0A3P5ZCH4_BRACM; Uncharacterized protein
STRINGBra005015.1-P5e-68(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1630655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.14e-37B3 family protein