PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g17770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 229aa MW: 25102 Da PI: 10.784 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 254.4 | 6.9e-78 | 38 | 229 | 104 | 301 |
GAGA_bind 104 gtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvs 202 t+ id +q pq ++a++ + + l + ++ +++++++ ++k+++ ++ k++++k+ ++k+ +++k+ +k++s ++ k+ekk+ d++++ s Tp4g17770 38 RTTGIDLSQV---PQE-NPAEGvMVPQVRLFPPSTKGSRNDMETMRQKSTNLSPLKALKPKQPRTKR--SAPKSPKKTPSI-PEIKREKKNPDINIDISS 130 5555555554...332.22333466666777777778888888888888888888888777777777..667777888887.69**************** PP GAGA_bind 203 lDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +D s++P+PvCsCtG++++CYkWG+GGWqS+CCt+++S+yPLP+st+r+gaR+agrKmS+ga+ klL +La+eGy+l pvDLk+hWA+HGtnkfvti+ Tp4g17770 131 FDVSGVPPPVCSCTGVPKVCYKWGMGGWQSSCCTISVSTYPLPMSTTRPGARLAGRKMSNGAYVKLLMRLAGEGYNLTLPVDLKNHWARHGTNKFVTIK 229 **************************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 7.5E-93 | 1 | 229 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 3.0E-68 | 63 | 229 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MNSYPSRSHM QSATGASKGT GLPTSNAHWF NSYFPVPRTT GIDLSQVPQE NPAEGVMVPQ 60 VRLFPPSTKG SRNDMETMRQ KSTNLSPLKA LKPKQPRTKR SAPKSPKKTP SIPEIKREKK 120 NPDINIDISS FDVSGVPPPV CSCTGVPKVC YKWGMGGWQS SCCTISVSTY PLPMSTTRPG 180 ARLAGRKMSN GAYVKLLMRL AGEGYNLTLP VDLKNHWARH GTNKFVTIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g17770 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410714.1 | 1e-143 | protein BASIC PENTACYSTEINE7 | ||||
Swissprot | O82286 | 1e-125 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | V4MAM5 | 1e-142 | V4MAM5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410714.1 | 1e-142 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13674 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 1e-128 | basic pentacysteine 7 |