PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g03860

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 205aa MW: 23665.4 Da PI: 10.0895

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g03860	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.1	8.3e-22	19	61	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ +s rqvtfskRr+g++KKA+EL++LC+ae+ +i++s+ k Tp4g03860 19 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVYSPAKK 61 8999***********************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.6E-30	9	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.142	9	69	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.41E-33	10	85	No hit	No description
SuperFamily	SSF55455	2.88E-28	10	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.3E-25	18	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009559	Biological Process	embryo sac central cell differentiation
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MTLKKKESIG RQKIPMVKIK KESHRQVTFS KRRAGLFKKA SELCTLCGAE IGIIVYSPAK 60 KPFSFGHPSV ESVLDRYLSR NNMSLVQTQQ HHGNAASNSE LNMRWMQILS EVEEEKKKGQ 120 AMAEMRKVNA RRSMINWWER PVEEMSMVQL QEMKYGLEEL RKMVVSETNK ALFNEVKEDV 180 FGFLDNKEKV PSNVYDLGYG NGCRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-15	9	93	1	95	MEF2 CHIMERA
6byy_B	2e-15	9	93	1	95	MEF2 CHIMERA
6byy_C	2e-15	9	93	1	95	MEF2 CHIMERA
6byy_D	2e-15	9	93	1	95	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g03860

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_850058.1	1e-112	AGAMOUS-like 61
Refseq	XP_010417244.2	1e-112	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_010417245.2	1e-112	PREDICTED: agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	1e-113	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	C0SV61	1e-112	C0SV61_ARATH; Uncharacterized protein At2g24840 (Fragment)
STRING	AT2G24840.1	1e-111	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-115	AGAMOUS-like 61

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]