PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g02050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HSF | ||||||||
Protein Properties | Length: 463aa MW: 51375 Da PI: 4.842 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.6 | 7.6e-37 | 27 | 118 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sws+ +nsfvv++ efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i Tp3g02050 27 FLSKTYDMVDDPSTNDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQLLKNIV 114 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Tp3g02050 115 RRKP 118 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.4E-39 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-59 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.18E-35 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.2E-32 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-19 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-19 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MGSICESVPT ANSSSASTTV MSSIPPFLSK TYDMVDDPST NDVVSWSSGN NSFVVWNVPE 60 FAKQFLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKQLL KNIVRRKPAQ 120 VQPQQQPQVQ HSSVGACVEV GKFGLEEEVE RLQRDKNVLM QELVRLRQQQ QVTEHHLQNV 180 GQKVHVMEQR QQQMMSFLAK AVQSPGFLNQ FSQQNNDGNQ HISESNKKRR LPVEDQKDTS 240 SHGVNGLSRQ IVRYQSSMNE SANTMLQQIQ NMSNSNSRHE PLSNNHGSFL LGAVPNSNIS 300 DNGSSTSGAS GVTLADVSSN PAKKYYEPGE TNQVLEASLP YSQGDLLAAA ACGSSNSDLV 360 GCETDNGECL DPIMAVLDGS IELEGNAINE LLPGAQDSLW EQFFGERPVI GDTDELISGS 420 VDNELIMEQL ELQSNLRNVL SNNQQMSHLT EQMELLTSDG LRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-27 | 22 | 116 | 15 | 120 | Heat shock factor protein 1 |
5d5u_B | 2e-27 | 22 | 116 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-27 | 22 | 116 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-27 | 22 | 116 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00328 | DAP | Transfer from AT3G02990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g02050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT026365 | 0.0 | BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408356.1 | 0.0 | heat stress transcription factor A-1e | ||||
Swissprot | Q9SCW5 | 0.0 | HFA1E_ARATH; Heat stress transcription factor A-1e | ||||
TrEMBL | V4M117 | 0.0 | V4M117_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408356.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02990.1 | 0.0 | heat shock transcription factor A1E |
Publications ? help Back to Top | |||
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