PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g24670
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 297aa    MW: 33089.4 Da    PI: 8.2023
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g24670genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000151232323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C+ C+ksF++   L  H+r+H
  Tp2g24670 12 CQVCKKSFPDGRALGGHMRSH 32
               ********************9 PP
2zf-C2H212.80.00035267289123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C +Cg++F +   L  H ++H
  Tp2g24670 267 YECDICGRVFESGQALGGHKKVH 289
                99**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2031037IPR007087Zinc finger, C2H2
SMARTSM003550.231032IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-81132IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576673.17E-7216289No hitNo description
PfamPF139123.2E-8218241IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286218245IPR007087Zinc finger, C2H2
SMARTSM003553.8218240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
PfamPF139121.1E-11266289IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.115267289IPR007087Zinc finger, C2H2
SMARTSM003550.022267289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280269289IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVYSLLKETK ICQVCKKSFP DGRALGGHMR SHTLKLSASN AESATGSSIP SLKTFTKLGT  60
NFRRPHETVL IRSVHTSEVG VGTKPDLKRE EGGPQITGKR KIFVDLDSVD STESQSCLTA  120
DVEQGALCLV AMSKGERPEN CQDTKAIERL VSTRKGKDKY TEKYIEIDSD DDQEGKYKYV  180
SKLLASNVGT LTEDNDDDED DDDETYLVAR EKKCKKKFPC DICGKVLYSY QALGGHRTGH  240
RNKRLKICDE NDQAVKPKNG AVVRRHYECD ICGRVFESGQ ALGGHKKVHY VFLQPSM
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g24670
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394501.21e-126zinc finger protein ZAT1
TrEMBLV4KPA21e-125V4KPA2_EUTSA; Uncharacterized protein
STRINGXP_006394501.11e-126(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.12e-82C2H2-like zinc finger protein