PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g00490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 274aa MW: 31009.7 Da PI: 7.6337 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 2e-18 | 101 | 150 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp +r r +lg+f taeeAak +++a+ +l+g Tp2g00490 101 KFRGVRQRP-WGKWAAEIRDP----IRrVRRWLGTFNTAEEAAKVYDHAAVQLHG 150 79*******.**********7....246999********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 3.1E-52 | 5 | 270 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
PROSITE pattern | PS00315 | 0 | 43 | 60 | IPR030513 | Dehydrin, conserved site |
SMART | SM00380 | 3.0E-33 | 101 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-21 | 101 | 159 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.327 | 101 | 158 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.12E-30 | 101 | 160 | No hit | No description |
Pfam | PF00847 | 2.3E-10 | 101 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-28 | 101 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 102 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEKGLISQRE HRRTIKHTYS LKRSVDTPRI LRISVTDPYA TDSSSSDDDD EDNGTRKRRR 60 VKRYVREITF ETPSFTTEHQ NDTVSKKRVL SESTEKKKKL KFRGVRQRPW GKWAAEIRDP 120 IRRVRRWLGT FNTAEEAAKV YDHAAVQLHG LAAVTNFPAA LIPPEPPCTA ACIQSPVTVL 180 LSPTSSDSLS NSPAGGEDRF AAAAQKTIFP PIDSVFLSDD FKLSEISVED CFSVGFSSTF 240 GFSNRHVEDR FYDIGDLFGS DHFLDFDYFF GSDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 101 | 158 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 59 | RKRRR |
2 | 55 | 62 | RKRRRVKR |
3 | 56 | 60 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g00490 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391650.2 | 1e-134 | ethylene-responsive transcription factor CRF1 | ||||
Swissprot | O82503 | 2e-51 | CRF1_ARATH; Ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | V4MCI3 | 1e-120 | V4MCI3_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006391650.1 | 1e-121 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22624 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 6e-32 | cytokinin response factor 1 |
Publications ? help Back to Top | |||
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