PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g00790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 29680.7 Da PI: 9.9441 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.6e-14 | 30 | 74 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Tp1g00790 30 RENWTEQEHDKFIEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 74 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.17E-16 | 24 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.766 | 25 | 79 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-17 | 28 | 77 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.0E-7 | 28 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-11 | 29 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-12 | 30 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-8 | 32 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MPVSVRNNTM SFYEDPTKKT RKPYTITKSR ENWTEQEHDK FIEALHLFDR DWKKIEAFVG 60 SKTVIQIRSH AQKYFLKVQK NGTNEHLPPP RPKRKANHPY PQKAPKSAAL TSSNALLEHE 120 YLYTTDSKAM ISTPKHGFMR RDVITPNPVI KEELGVPENC CSSSSSRDKQ RTRTVSETNE 180 QESCEKRHRV MPNFVEVYSF IGSVFDPQTT GHVQRLKQMD PINLETVLLL MRNLSVNLKS 240 PEFEEQRNLI SSYNGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g00790 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418431.1 | 1e-165 | protein REVEILLE 3 | ||||
Swissprot | Q6R0H0 | 1e-152 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | V4KZJ0 | 1e-163 | V4KZJ0_EUTSA; Uncharacterized protein | ||||
STRING | Cagra.1968s0093.1.p | 1e-165 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01520.1 | 1e-154 | MYB_related family protein |
Publications ? help Back to Top | |||
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