PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028883m
Common NameEUTSA_v10028883mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 269aa    MW: 28827 Da    PI: 4.8371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028883mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12202247655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Thhalv10028883m 202 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKVLQ 247
                      689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.557196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16199260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-12200251No hitNo description
Gene3DG3DSA:4.10.280.105.4E-16201259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-12202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-10202247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQSTSVGSSG GGSGGGSNSG GGGGGGGGGG QVSRSGLSRI RSAPATWLEA LLEEDEEESL  60
KPTNLGLTEL LTGNSADLPT SRGSFEFPIP VGHGLYQESG FHRQNSTPAD FLSGSDGFIP  120
SFGIPANYEY LSPNIDVVSP GSKRSREMEA LFSSPEFTSQ MKGEQSSGQV PGMTDMNVDN  180
VMEDSVAFRV RAKRGCATHP RSIAERVRRT RISDRIRKLQ ELVPNMDKQT NTADMLEEAV  240
EYVKVLQRQI QELTEEQKKC TCMPKEEQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028883m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2303840.0AK230384.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL24-31-D13.
GenBankBT0104230.0BT010423.1 Arabidopsis thaliana At4g09180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397195.10.0transcription factor bHLH81
SwissprotQ9M0R01e-140BH081_ARATH; Transcription factor bHLH81
TrEMBLV4L4T00.0V4L4T0_EUTSA; Uncharacterized protein
STRINGXP_006397195.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.11e-121bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]