PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028747m
Common NameEUTSA_v10028747mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 367aa    MW: 42262.4 Da    PI: 8.4385
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028747mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-05118141123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C+ C+++F +++ L +H r  H
  Thhalv10028747m 118 YFCGVCDRRFYTNEKLISHFRQiH 141
                      78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.7E-636118IPR029060PIN domain-like
PfamPF019362.9E-640271IPR021139NYN domain, limkain-b1-type
SuperFamilySSF576675.88E-5116145No hitNo description
PROSITE profilePS5015711.157118146IPR007087Zinc finger, C2H2
PROSITE patternPS000280120141IPR007087Zinc finger, C2H2
CDDcd061674.84E-11184270No hitNo description
Gene3DG3DSA:3.40.50.10104.7E-6203271IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MKIPAMFSRF VLRIRRPITP VMSLDSIRGF SSINPKPTIR VAVFWDLDNK SPASFPPYDA  60
AVKLRTAASS FGFVKLMVAY ANRHAFSYVP VEVREQRKER KLLNQLENKG LVKPPDPYFC  120
GVCDRRFYTN EKLISHFRQI HETENQKRMR QIESAKGHQR VRLVAKYSMK LEKYKRAARN  180
IMTPKEGYGL ADELKRACFW VKMVSDKPEA ADRALKEHMV DVMDKREVEC VVLVSDDSGF  240
AEILWEAKER CVRTVVIGDL NEGALKRVAD VAYSWKEVVM GKAKKEVEKV VGKWKDRDVL  300
KKLEWTYDPA LEKEKSSCGV WDYEFDYDDD EIENGTEVES VEIGDDGGNW WEIDNENGVG  360
SSRHCQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028747m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396784.20.0uncharacterized protein LOC18014417
TrEMBLV4L7B90.0V4L7B9_EUTSA; Uncharacterized protein
STRINGXP_006396784.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein