PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028240m
Common NameEUTSA_v10028240mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 385aa    MW: 43723 Da    PI: 8.9023
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028240mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.3e-1622971093
                     HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                      ++++ l++p  f ++h  g +  e+ ++ l+   +  +W+vk+  ++++    ltkGW++F  an+L++gDf+vF+++g+  f  +
  Thhalv10028240m 22 GFNTH-LSIPVAFYTKHlqGRE--EGNEVELRVdVTEITWKVKI--EGRR----LTKGWENFTAANDLRVGDFLVFRHEGNLVF--H 97
                     55666.9**********85434..4456666644999*******..8888....***********************7765444..3 PP
2B351.71.6e-16150230687
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      +++++l+++ + lpk+f+++ g+++ + ++++l+de+grs +++++y ++ +r+  ++GW+ F+ an+Lk+g ++ +++ g+
  Thhalv10028240m 150 VTASNLRLDGFHLPKSFTTSSGLSTLC-QEIILMDEKGRSSTLEMTYHNSTKRFHVRRGWRAFCCANELKTGCILRLMFFGN 230
                      68899999**********999999755.6*******************************************9999887664 PP
3B363.14.6e-202933761094
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      +l+ +rl lp k  +++ +++ + ++++l++++gr+W++ l+yrk+s+++ +t GWk+F++ang k+g +++Fkl++++++  ++
  Thhalv10028240m 293 NLRDDRLFLPVKLSKSNILNESC-QEISLMNKQGRTWTLSLKYRKSSNQFCITHGWKSFCHANGQKAGCSILFKLIRNRTGPVLI 376
                      67889************888766.6***************************************************987775544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-227106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.9712104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-2012110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-1613101No hitNo description
SMARTSM010193.7E-2115104IPR003340B3 DNA binding domain
PfamPF023621.2E-112497IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-16138230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16144234IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.137145245IPR003340B3 DNA binding domain
CDDcd100176.29E-14145235No hitNo description
SMARTSM010199.6E-18146242IPR003340B3 DNA binding domain
PfamPF023627.2E-15149232IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-21280379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-20280377IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-16284371No hitNo description
PROSITE profilePS5086313.831284380IPR003340B3 DNA binding domain
SMARTSM010192.6E-23285381IPR003340B3 DNA binding domain
PfamPF023622.4E-18292376IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAYSISSSSL ANPHFFQPML PGFNTHLSIP VAFYTKHLQG REEGNEVELR VDVTEITWKV  60
KIEGRRLTKG WENFTAANDL RVGDFLVFRH EGNLVFHVTP FGPSCCELIY SQEEEDEKNT  120
KHKTGKLKVK KIPKQECSSS DSDTSFVVPV TASNLRLDGF HLPKSFTTSS GLSTLCQEII  180
LMDEKGRSST LEMTYHNSTK RFHVRRGWRA FCCANELKTG CILRLMFFGN GAKPIPRMIP  240
VERDEKDDDI GKHSKKKKDN LEVEHESVDE KKNVEPLSLS DNYSFVVPVT VCNLRDDRLF  300
LPVKLSKSNI LNESCQEISL MNKQGRTWTL SLKYRKSSNQ FCITHGWKSF CHANGQKAGC  360
SILFKLIRNR TGPVLIMTSE ASTSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028240m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405883.20.0B3 domain-containing protein REM-like 3
SwissprotF4KFT61e-133REML3_ARATH; B3 domain-containing protein REM-like 3
TrEMBLV4NLN80.0V4NLN8_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405883.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17423910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.11e-130B3 family protein