PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027046m
Common NameEUTSA_v10027046mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 502aa    MW: 56395.1 Da    PI: 6.1026
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027046mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438e-1422971294
                     HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     ++++ ++p  f+ +h +  k+e ++l+l++    r+Wevkl  +++s    +++GW++F  a+ Lk+ D+++F+++g+++f  +v
  Thhalv10027046m 22 QNSIPRIPDAFFHAHlE-HKKELVKLKLTSdAFERTWEVKL--NGRS----FAGGWEDFSAAHCLKDDDVLIFRHHGDMTF--HV 97
                     566678*********54.5556788888885677*******..9998....99*********************9999998..55 PP
2B353.35.2e-17184273798
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++++l+++r++l k+f +++ ++k+    + l++++g+sW + l+++k  g+ y+l+ GW++F++an+Lk+g f  F+l++ +++++++++++
  Thhalv10027046m 184 TPSNLRQDRVSLTKRFSRTNALNKRW-CVIDLMNQRGKSWALGLRHNKVTGQdYILG-GWRSFCRANELKTGIFYRFELVR-NGARPLLQLCS 273
                      578999**************999865.49***************9966666647777.*********************98.78889999886 PP
3B349.76.7e-16305396499
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      v++++++lks++l+l+ +f +++g+kke+  ++tl d++g +W  ++     +gr ++tkG  +F  an++++g++++++l++ +++++++k++
  Thhalv10027046m 305 VTLKPYMLKSRQLRLSSDFSRKNGIKKEG--EITLVDKNGVKWPSYV--VCVQGRLYITKGVIDFWAANQIETGETFTLELVRGEGTTPMLKFC 394
                      56789*******************99877..7***************..6666789**************************99********** PP

                      -S CS
               B3  98 rk 99 
                      +k
  Thhalv10027046m 395 SK 396
                      97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.53E-1510101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-161099IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.51811103IPR003340B3 DNA binding domain
CDDcd100171.52E-121298No hitNo description
SMARTSM010194.3E-1415103IPR003340B3 DNA binding domain
PfamPF023625.8E-82796IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-17171273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.365178274IPR003340B3 DNA binding domain
SMARTSM010191.3E-21180275IPR003340B3 DNA binding domain
PfamPF023627.2E-16184273IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-15184274IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-15184273No hitNo description
Gene3DG3DSA:2.40.330.103.7E-14296396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15299396IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.3E-19302397IPR003340B3 DNA binding domain
PROSITE profilePS5086310.08302396IPR003340B3 DNA binding domain
CDDcd100174.46E-10302387No hitNo description
PfamPF023621.9E-15304396IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MADPSIPPKH NPSFFLASLA DQNSIPRIPD AFFHAHLEHK KELVKLKLTS DAFERTWEVK  60
LNGRSFAGGW EDFSAAHCLK DDDVLIFRHH GDMTFHVTPS GRSFSKILCI SSSSDDSDDD  120
DDDDDSEDDD DDSDNDSEDD DDEDDDDDET WDNGSDSKNI LSKEKSRLKA ESSSSENSCF  180
LAPTPSNLRQ DRVSLTKRFS RTNALNKRWC VIDLMNQRGK SWALGLRHNK VTGQDYILGG  240
WRSFCRANEL KTGIFYRFEL VRNGARPLLQ LCSDITSQGN CSKANRKAKV SAKSSREDES  300
ASLTVTLKPY MLKSRQLRLS SDFSRKNGIK KEGEITLVDK NGVKWPSYVV CVQGRLYITK  360
GVIDFWAANQ IETGETFTLE LVRGEGTTPM LKFCSKAKVQ EETETRFQKR ARVSSEGGPS  420
RCTQASNKST AAPKNLECKQ PLQPCSFSDQ LTKVKQCSVG IITDVRRFRS ELEIKEQNLE  480
ALLQELSALG EKVLEINKII K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027046m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004604.10.0B3 domain-containing protein REM3 isoform X2
SwissprotQ8VZQ90.0REM3_ARATH; B3 domain-containing protein REM3
TrEMBLV4MMK70.0V4MMK7_EUTSA; Uncharacterized protein
STRINGXP_006412575.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]