PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025409m
Common NameEUTSA_v10025409mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 394aa    MW: 45149.2 Da    PI: 4.9986
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025409mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.8e-34161072102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++ +Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l++
  Thhalv10025409m  16 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRGLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANEDFVRGEPHLMK 100
                      9**************************************************************99988.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Thhalv10025409m 101 NIHRRKP 107
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3411105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-6112105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.9E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDESNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRGLLPRFFK  60
HNNFSSFIRQ LNTYGFRKAD PEQWEFANED FVRGEPHLMK NIHRRKPVHS HSLPNLQAQQ  120
NPLTDSERQR MNNQIERLTK EKEGLLEELH KQEEEREVFE QQVKKLKDQL QHMEKRQKTM  180
VSFVSQVLEK PGLALNLSPS LPETNERKRR FPRLGFEPML EENQTCVVAR EEGSTSPSSH  240
TTEHQVEQLE SSIAIWENLV SESCESMAQS TRSMMTLDVD ESSTCPESPP LSCIQLSIDT  300
RPKCPPSPRI IDMNSEPDVS KEQSTVAPAP PPPAAGVNDV FWQQFLTENP GSAEQREVQL  360
ERKDDKAEDR SEKCWWNSRN VNTITEQLEH LTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-211110515120Heat shock factor protein 1
5d5u_B1e-211110524129Heat shock factor protein 1
5d5v_B1e-211110524129Heat shock factor protein 1
5d5v_D1e-211110524129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025409m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525160.0AK352516.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414044.10.0heat stress transcription factor A-4a
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLE4MVG90.0E4MVG9_EUTHA; mRNA, clone: RTFL01-01-A16
TrEMBLV4MJD70.0V4MJD7_EUTSA; Uncharacterized protein
STRINGXP_006414044.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.10.0heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]