PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024755m
Common NameEUTSA_v10024755mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 588aa    MW: 66290.8 Da    PI: 9.4007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024755mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000316283223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     kC++C++ F ++ n++rH r+H
  Thhalv10024755m 62 KCEKCSREFCSPVNFRRHSRMH 83
                     7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.3056188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MELVKQDGND SLDMLIRRAV GKDPFLSFPR PESNPVQLFQ LLHTLERPGW PLLTPLKIQM  60
QKCEKCSREF CSPVNFRRHS RMHRRLRKPE KDTGKERDAL GDFWNKLSVP DAKEILSLKS  120
MMLENVPGTS VESGLMSFIE KPGYTALPQY YLRAGSELLD IIQARPPRFP ISSQELFSIL  180
DDASEKTFLC SEAAPMQRYI FDGEIGKNVL EAKNVVACAS FLLEQRLIKA WLADKDAEAL  240
RCQNLLVEEE EAARRRQAEL LERKKRKKLR QKEQRVKDQK KYAKEDESTT SEEQQSPAES  300
SSPLSVASDS EAQRSDSIPV EDCSSLEDPQ VLEMDNGRNS KTQAPMVDVD GFGNGQNMER  360
RSGRRQMERS QYGMPNGFHA NHAPKLGGMR KNGTNRDARA NTTKIWSRKA DNPKSISTQL  420
DQTKNREVLI GSVSVTIRNS CLSGEHNQTN NSEEEGRTKT VEARPTSEQS NAKVWRPVSS  480
QGRKVSTVDE NADKEDKKSN ATAPEVKTAH HISSQFNNHE AKAFLAQRWK EATSAEHVTL  540
VLSQETDMSG NNTHESSNGV ITAARPKLRM KPEKGTKVKY VLKQRIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253267RRRQAELLERKKRKK
2261268ERKKRKKL
3263267KKRKK
4266276KKLRQKEQRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024755m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0812940.0AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
GenBankBT0003860.0BT000386.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413290.10.0uncharacterized protein LOC18029908
RefseqXP_024004636.10.0uncharacterized protein LOC18029908
TrEMBLV4MP250.0V4MP25_EUTSA; Uncharacterized protein
STRINGXP_006413290.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein