PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024487m
Common NameEUTSA_v10024489mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HB-PHD
Protein Properties Length: 761aa    MW: 86695 Da    PI: 4.5019
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024487mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.76.2e-11461505953
                      HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      ++ +e L ++F++n  ps++ r  L+k+l+L+ ++V+ WF+N R+
  Thhalv10024487m 461 RDAVEKLRQVFAENELPSKAVRDSLSKELSLEPEKVSKWFKNARY 505
                      678899*************************************97 PP
2PHD41.14e-14191246151
                      SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ C++  + ++++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  Thhalv10024487m 191 FCAECNSreAFQDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKYCDCK 246
                      6999**966566********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.02E-14183248IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.4E-12187247IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.021189246IPR019787Zinc finger, PHD-finger
CDDcd155041.39E-30191243No hitNo description
SMARTSM002499.1E-10191244IPR001965Zinc finger, PHD-type
PfamPF006283.8E-11191246IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590192243IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.3E-13438504IPR009057Homeodomain-like
SuperFamilySSF466892.14E-10450513IPR009057Homeodomain-like
PROSITE profilePS5007113.038450510IPR001356Homeobox domain
SMARTSM003898.6E-12452514IPR001356Homeobox domain
CDDcd000864.02E-9453505No hitNo description
PfamPF000462.4E-8461505IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MEESEKKGRN EQETDKACVP VERIGSTLLS SLVKKGKETT NKRKYNKRKT EEEICSKSRN  60
KKYSRGWVRC EEEEEEEKGK RTRKRKSKRQ QKDNKVELDE ALRLQRRTRY LLIKMKMQQN  120
LIDAYATEGW KGQSREKIRP DKELERARKQ ILNCKLGLRD AIRQLDMLSS VGSIEEKVMA  180
PDGSIHHDHI FCAECNSREA FQDNDIILCD GTCNRAFHQK CLDPPLETES IPPGDQGWFC  240
KYCDCKMEII DTMNAQIGTH FPVDSNWQDI FNEEASLPIG SEATLNNEAD WPSDDSEDGD  300
YDPEMKENGG VSNSRSDSGG DGDNDGESIS TSLSLASDGV ALSTGSWEGH GFGNMLESCE  360
TSNEETVCGP RQRKTVDYTK LYHEMFGKDA VLQEQGSEDE DWGPSDRRKR RKESDAASTL  420
VTMCENRKKD EDVEEIPEQS EKDSVSVEGK GGRRPMFRLP RDAVEKLRQV FAENELPSKA  480
VRDSLSKELS LEPEKVSKWF KNARYMALRN RKTESVKQPE DSKVFSGDSR PEAVMEKKIE  540
TKEIQDTVAE TVMEKNTETN EIQDTVDETV MEKSTETNEI QDTVDETVME KNTETNEIQD  600
IVDETNTETN ETQETMDETI PLGFNDSTNQ TTISPCIDNQ EEIQLANVSL PKSIEDESQQ  660
DPEQKDSSFT LVPHEELGSE MSLKTPLEDK ETERKMTEEE EFEAVMEVLC MAENKLLDVT  720
QRLERFRTPK GRKKLGKSSS SLPEEDSVVY VPTAEIKEKR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186TRKRKS
2407412RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024487m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHPRHA0.0L21991.1 Arabidopsis thaliana homeodomain protein (PRHA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412784.10.0pathogenesis-related homeodomain protein
RefseqXP_006412785.10.0pathogenesis-related homeodomain protein
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLV4MG340.0V4MG34_EUTSA; Uncharacterized protein
STRINGXP_006412784.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.20.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]