PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10024148m | ||||||||
Common Name | EUTSA_v10024148mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 186aa MW: 21725.5 Da PI: 4.5211 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.4 | 1.6e-11 | 43 | 151 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvg 101 tde +++++L+ ++++ ++ +y+++Pw+ +++ + ++ F+k ++ +a+ r+ +g W+ g+dk ++s+ +g+ g Thhalv10024148m 43 TDERMISHHLNMMINESW-------PHEYVYNLNPWTTF---NNTPNpNYMVFVKPRT-EAS-GRTDDGCGAGCWRIIGRDKLIKSEeTGKILG 124 555556555555555444.......44579999**9985...2333414555555544.443.577777899*************98778889* PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 k++L f +++ +++e+ Wvm+e+rl Thhalv10024148m 125 FKRILKFCDKEMRRSEERIWVMEEFRL 151 *************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.506 | 26 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-8 | 42 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-17 | 43 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MEDHSISTED DDDQIEPEEE EGMEEIQYYL SSSDDDEERI PATDERMISH HLNMMINESW 60 PHEYVYNLNP WTTFNNTPNP NYMVFVKPRT EASGRTDDGC GAGCWRIIGR DKLIKSEETG 120 KILGFKRILK FCDKEMRRSE ERIWVMEEFR LADKRKQDQV MCTIQLLLLP AVSALLAKHF 180 SFLPK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10024148m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392198.1 | 1e-138 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | V4KEC9 | 1e-137 | V4KEC9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392198.1 | 1e-137 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60280.1 | 5e-36 | NAC domain containing protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10024148m |
Entrez Gene | 18009863 |