PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023982m
Common NameEUTSA_v10023982mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 90aa    MW: 10426 Da    PI: 10.1107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023982mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-114086454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +h+ +E+ RRd+i +++  L++l+P +    +k   Ka +L + ++YI+sL
  Thhalv10023982m 40 SHSLAEKARRDKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSL 86
                     8*************************9....677***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-153489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.5863686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-153989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-84086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-64090No hitNo description
SMARTSM003531.5E-44288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MEKQKQDCRR KTKIDQQKQQ IDPTKDYIHV RARGGQATDS HSLAEKARRD KISERMKILQ  60
DLVPGCNKVI GKALVLDEII NYIQSLHDKL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023982m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0282327e-75AB028232.1 Arabidopsis thaliana ZCW32 mRNA for helix-loop-helix protein homolog, complete cds.
GenBankAM2697537e-75AM269753.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPE normal splice form.
GenBankAM2697547e-75AM269754.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPEp splice form.
GenBankAY0863737e-75AY086373.1 Arabidopsis thaliana clone 24644 mRNA, complete sequence.
GenBankBT0039647e-75BT003964.1 Arabidopsis thaliana clone RAFL15-08-I05 (R20798) putative bHLH protein (At1g59640) mRNA, complete cds.
GenBankBT0050647e-75BT005064.1 Arabidopsis thaliana clone U20798 putative bHLH protein (At1g59640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392265.11e-44transcription factor BPE
SwissprotQ0JXE79e-40BPE_ARATH; Transcription factor BPE
TrEMBLV4KQE03e-58V4KQE0_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006392267.15e-59(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-36BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]