PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023448m
Common NameEUTSA_v10023448mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 465aa    MW: 51518.4 Da    PI: 10.2856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023448mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-071363348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                      W t+E++ll  av ++G+g+W+ +a ++      + +t++ ck ++++++
  Thhalv10023448m 13 DWGTWEELLLGGAVLRHGTGDWTVVADELRshslpEILTPEICKAKYNDLR 63
                     5*****************************999998899999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002974.6E-16249357IPR001487Bromodomain
CDDcd043696.26E-14258350No hitNo description
SuperFamilySSF473701.83E-16258356IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.2E-13258358IPR001487Bromodomain
PfamPF004396.0E-9262340IPR001487Bromodomain
PROSITE profilePS500149.201268338IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MMTMTTTTKM ASDWGTWEEL LLGGAVLRHG TGDWTVVADE LRSHSLPEIL TPEICKAKYN  60
DLRERYLGCK AWFEELKKKR VAELKLALLK SEDSIGSLES KLQSLKSESN DEECHQNNYD  120
SSRTLSLEPS PKSEGGGECT SKDTSKDLSS AGSFTQQELT TTNWSPEAPA ITIEQEEKKT  180
NVLHNDIFES VYGVGGGGQV LPNMRKKRGK RKRKGCSIVE ESDVLDSSLD IASISRSNKE  240
AASTSSSQSR GHGLASPEEL MKIYNSIAEN ECALVFRRRL DSQKRGRYKK LVRRHMDLDT  300
IKSRINGCLI TSAKEVFMEF LLVANNAAIF YSKNTREHKS GVSLRDIVTK SLRHYLTEDH  360
HLHRSSSITT STTKVPVQPS TSKSPPVRTS LAAKKPRTGT HPLKTVVQDI VKPSSGGKRT  420
PVASMKSSAA SKKGTVVERR RDGRQVNRGL DSPALKGRKR NRVR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277290RRLDSQKRGRYKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023448m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392029.20.0uncharacterized protein LOC18009570
TrEMBLV4JV950.0V4JV95_EUTSA; Uncharacterized protein
STRINGXP_006392029.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.17e-23DNA-binding bromodomain-containing protein