PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10023058m | ||||||||
Common Name | EUTSA_v10023058mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 478aa MW: 55071.3 Da PI: 5.6843 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.9 | 9.8e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r nratk gyWkatgkd++v Thhalv10023058m 6 LPPGFRFHPTDEELITYYLKRKTNGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRINRATKGGYWKATGKDRRV 98 79****************************.99***************6345667999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktLv+y+grap+g +t Wvmheyrl Thhalv10023058m 99 SW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 *9.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-62 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.377 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-28 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELI TYYLKRKTNG LEIELEVIAE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRI NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YVHAMSNVSG 180 NSSFDACSDV EISSANHQLQ NAFQPRFGNG RFNSNAISNE GWSQYHGSSY GPFPTPYKVN 240 SEIECSMLQH NISLPPLRVE NSTVRDCDFF TSMTQNNDPS VLEDFSFAAS NSNHYNSVND 300 QVIHIGNYDE PLLMPNHHMN QDYIEEQKII SGLNDIHQDH GFQGISTNSN IDIYDLFSFD 360 IYNEENVNRI EGNEEDVNTN ETLDSSGFEV VEEEIRFSNQ MLISTYQTTK ILYHQVVPSH 420 TLKVHINPTN HNVEERTLFI EEDKDSWLQR AEKITKTKLT LVSLVAQQYY KCLAIFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-55 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-55 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10023058m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT030461 | 0.0 | BT030461.1 Arabidopsis thaliana At3g03200 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024016592.1 | 0.0 | NAC domain-containing protein 45 | ||||
Swissprot | A4VCM0 | 0.0 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | V4NV53 | 0.0 | V4NV53_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409228.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4411 | 18 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03200.1 | 0.0 | NAC domain containing protein 45 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10023058m |
Entrez Gene | 18026413 |
Publications ? help Back to Top | |||
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