PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022055m
Common NameEUTSA_v10022055mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 478aa    MW: 54982.2 Da    PI: 5.5594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022055mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-5461331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k  + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v
  Thhalv10022055m   6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRV 98 
                      79****************************.99***************6345667999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++++g+kktLv+y+grap+g +t Wvmheyrl
  Thhalv10022055m  99 SW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133
                      *9.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-634157IPR003441NAC domain
PROSITE profilePS5100561.0436157IPR003441NAC domain
PfamPF023657.0E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090602Biological Processsieve element enucleation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECDP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YVHAMSNVSG  180
NSSFDACSDV EISSANHQLQ SAFQPRFGNG RFNSNAISNE GWSQYHGSSY GPFPTPYKVN  240
SEIECSMLQH NISLPPLRVE NSTVRDCDFF TSMTQNNDPS VLEDFSFAAS NSNHYNSVND  300
QVIHIGNYDE PLLMPNHHMN QDYIEEQKII SGLNDIHQDH GFQGISTNSN IDIDDLFSFD  360
IYNEENVNRI EGNEEDVNTN ETLDSSGFEV VEEEIRFSNQ MLISTYQTTK ILYHQVVPSH  420
TLKVHINPTN HNVEERTLFI EEDKDSWLQR AEKITKTKLT LVSLVAQQYY KCLAIFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-55115712165NO APICAL MERISTEM PROTEIN
1ut4_B5e-55115712165NO APICAL MERISTEM PROTEIN
1ut7_A5e-55115712165NO APICAL MERISTEM PROTEIN
1ut7_B5e-55115712165NO APICAL MERISTEM PROTEIN
3swm_A5e-55115715168NAC domain-containing protein 19
3swm_B5e-55115715168NAC domain-containing protein 19
3swm_C5e-55115715168NAC domain-containing protein 19
3swm_D5e-55115715168NAC domain-containing protein 19
3swp_A5e-55115715168NAC domain-containing protein 19
3swp_B5e-55115715168NAC domain-containing protein 19
3swp_C5e-55115715168NAC domain-containing protein 19
3swp_D5e-55115715168NAC domain-containing protein 19
4dul_A5e-55115712165NAC domain-containing protein 19
4dul_B5e-55115712165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00329DAPTransfer from AT3G03200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022055m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0304610.0BT030461.1 Arabidopsis thaliana At3g03200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408330.10.0NAC domain-containing protein 45
SwissprotA4VCM00.0NAC45_ARATH; NAC domain-containing protein 45
TrEMBLV4MBE50.0V4MBE5_EUTSA; Uncharacterized protein
STRINGXP_006408330.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44111852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.10.0NAC domain containing protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]