PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020904m
Common NameEUTSA_v10020904mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 389aa    MW: 41922.3 Da    PI: 7.1616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020904mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046178200123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Thhalv10020904m 178 YQCKTCDRTFPSFQALGGHRASH 200
                      9***********99999998887 PP
2zf-C2H2130.00031254276123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Thhalv10020904m 254 HECGICGAEFTSGQALGGHMRRH 276
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-8177200No hitNo description
PfamPF139122.3E-12177202IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471178205IPR007087Zinc finger, C2H2
SMARTSM003550.028178200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-8249276No hitNo description
Gene3DG3DSA:3.30.160.608.0E-4252278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11253278IPR007087Zinc finger, C2H2
SMARTSM003550.047254276IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93254278IPR007087Zinc finger, C2H2
PROSITE patternPS000280256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEIAEEAISA AKEQSSSILK GKRTKRQRPL SPIPFSIVPP MSSQEPDVEE ESTSLVSKDK  60
CLNDEMINNN NKNDNNILIN GVTSSSSASS SSNNNETLKA AADEEDQDMA NCLILLAQGH  120
HNHQQPQQQT RQLMISYQES GNNNNNAYRS SSRRFLETSS SNGTTTNGGG GRAGYYVYQC  180
KTCDRTFPSF QALGGHRASH KKPKAAAGLH DLKKSIYDDA VSLQLNKVLT TTPNNNNNHR  240
SLVVYGKASN NKVHECGICG AEFTSGQALG GHMRRHRGAV VAAAAASTAT VAVAATANTA  300
LSLSPMSFDP MSDGPVQAPV KKARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH  360
EQTQQKTQRE EQKSLVLSTA PTLVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020904m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115600.0AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134280.0AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407564.10.0zinc finger protein ZAT5
TrEMBLV4M2I50.0V4M2I5_EUTSA; Uncharacterized protein
STRINGXP_006407564.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-153C2H2 family protein