PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020648m
Common NameEUTSA_v10020648mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 475aa    MW: 52456 Da    PI: 5.5643
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020648mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.3e-36271182102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ l+
  Thhalv10020648m  27 FLSKTYDMVDDPSTNDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHILK 111
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k 
  Thhalv10020648m 112 SIVRRKP 118
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-3919111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.71E-3523116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGSVSASVPT ANSSSASTTV MSSIPPFLSK TYDMVDDPST NDVVSWSSGN NSFVVWNVPE  60
FAKQFLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHIL KSIVRRKPAQ  120
VQPQQQPQVQ HSSVGACVEV GKFGLEEEVE RLQRDKNVLM QELVRLRQQQ QVTEHHLQNV  180
GQKVHVMEQR QQQMMSFLAK AVQSPGFLNQ FAQQNNDGNQ QHISESNKKR RLPVEDQSQR  240
NSGSHGADGL SRQIVRYQSS MNEAANTMLQ QIQNMNSHSR HESVSNNHGS FLLGDVPNSN  300
LSDNGSSSNG ASGVTLADVS SNPTRSYPGT KYHGPCETNQ VLEANFPYSQ ADLLAPKQGA  360
TAYGSPNSDV VGCETDNGEC LDPIRAVLDG SMELEADGIN ELLPGVQDSL WEHFFGESPV  420
IGDTDELVSG SVENGVIMEQ LELQSSLRNV LSNNQQMNHL TEQMGLLTSD ALRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-252211624129Heat shock factor protein 1
5d5v_B1e-252211624129Heat shock factor protein 1
5d5v_D1e-252211624129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020648m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0263650.0BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408356.10.0heat stress transcription factor A-1e
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLV4M1170.0V4M117_EUTSA; Uncharacterized protein
STRINGXP_006408356.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]