PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015488m
Common NameEUTSA_v10015488mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 380aa    MW: 43170.5 Da    PI: 6.8556
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015488mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.67.6e-47291583128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      pGfrFhP+deel+++yL+kkv++ +    ++ ++ i evd+yk++P+dLp  +k+k++++ew+fFs+ +k+y +++r nratk+gyWk+tg+d+
  Thhalv10015488m  29 PGFRFHPSDEELISYYLTKKVKDPSqskpMS-FDWIGEVDVYKHDPSDLPghSKLKTKDQEWFFFSSLEKRYINSDRMNRATKEGYWKKTGRDR 121
                      8********************9877665344.478***************6448899999********************************** PP

              NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++s +++l+g+ k+Lvf++grap+  +t+Wvmheyrl
  Thhalv10015488m 122 KIKS-GQKLIGMIKSLVFHRGRAPNCLRTNWVMHEYRL 158
                      ****.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-5321178IPR003441NAC domain
PROSITE profilePS5100552.47327178IPR003441NAC domain
PfamPF023654.2E-2529158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MTDRALPASE TVPTTARGND AAAVTSFGPG FRFHPSDEEL ISYYLTKKVK DPSQSKPMSF  60
DWIGEVDVYK HDPSDLPGHS KLKTKDQEWF FFSSLEKRYI NSDRMNRATK EGYWKKTGRD  120
RKIKSGQKLI GMIKSLVFHR GRAPNCLRTN WVMHEYRLVE NKQGLETDAY VLCRLFRKGN  180
DLGPGGCIYA PFSEQDWDDD VDGGRAPVPS VVQANRSNEI PQENHSQSKS LIDLNEPAYF  240
EIHDDPKIVD QDDNNEPLTQ ALCVVNKEVP FPLMIKYKRK RQIDSIGSYN NSSQTTHQNH  300
CSSTLEVSEP EPVAKMVPTS SSSTELINHL QKEKQQMAVE GETYKLQMTN AEMTISFLQA  360
EINKLRVENE ELKKSNSNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-39171815171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015488m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399623.10.0NAC domain containing protein 50
SwissprotQ9SQX91e-107NAC50_ARATH; NAC domain containing protein 50
TrEMBLV4N6990.0V4N699_EUTSA; Uncharacterized protein
STRINGXP_006399623.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1873667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-109NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]