PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10014229m | ||||||||
Common Name | EUTSA_v10014229mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | B3 | ||||||||
Protein Properties | Length: 299aa MW: 34031.6 Da PI: 4.2657 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 5.1e-15 | 16 | 102 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 d + s+rlv+p ++ + ++++ ++t +l+ ++g+ W+vk + ++++ + +++GW++Fv +ng gD+++F++dg +++++v+++r+ Thhalv10014229m 16 QDLSLSQRLVIPSDYR-MY-YPNPLPQTAVLRKPEGNFWNVKW--TISQEGtISFEDGWSKFVTDNGPIHGDILLFSYDG--CRNFFVRIYRN 102 45556799*****996.55.3345899****************..555444499***********************987..66669999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.65E-19 | 5 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-17 | 7 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.5E-11 | 9 | 103 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.479 | 9 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-13 | 16 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.13E-14 | 17 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MVFSPYPDFG FTFNSQDLSL SQRLVIPSDY RMYYPNPLPQ TAVLRKPEGN FWNVKWTISQ 60 EGTISFEDGW SKFVTDNGPI HGDILLFSYD GCRNFFVRIY RNGLVVETKS PIKIQEISDD 120 DDERNSSDDD DDDHDMENEE DSNDENKIIS LSLGSSDEDD DDDDDDDTTL AEVNKSNGSS 180 KKGGTSQKKR AESIGDPAMY LDDPTNPCFI PISSYRRMMV IAQQVIKDHD LKFGETINLI 240 DGFGQVEGKV VEWKDRIVVY SWDEVCKRNH AKLEDVIICE ILHERGLVQS IKAHFVKK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10014229m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401176.1 | 0.0 | B3 domain-containing protein At5g57720 | ||||
Swissprot | Q9FHH1 | 1e-107 | Y5772_ARATH; B3 domain-containing protein At5g57720 | ||||
TrEMBL | V4LFY9 | 0.0 | V4LFY9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006401176.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13797 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57720.1 | 4e-88 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10014229m |
Entrez Gene | 18016451 |
Publications ? help Back to Top | |||
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