PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013903m
Common NameEUTSA_v10013903mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 364aa    MW: 40565 Da    PI: 5.0006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013903mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.5e-49301552128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       pGf+F+Ptd el+++yLk+k++g + ++ evi+++diy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s
  Thhalv10013903m  30 FPGFKFSPTDVELISYYLKRKMAGLERSV-EVIPDADIYNFEPWDLPdKSIVKSDTEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS 122
                      69************************999.99***************778888999************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++e++g+k+tLvf+ grapkge+t+W+mhey +
  Thhalv10013903m 123 -SSEVIGTKRTLVFHIGRAPKGERTEWIMHEYCM 155
                      .999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-5422171IPR003441NAC domain
PROSITE profilePS5100551.78929172IPR003441NAC domain
PfamPF023657.6E-2531154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MYANAFMEAE AEAVGISKDK AASVEASTVF PGFKFSPTDV ELISYYLKRK MAGLERSVEV  60
IPDADIYNFE PWDLPDKSIV KSDTEWFFFC ARGKKYPHGS QNRRATKMGY WKATGKERDV  120
KSSSEVIGTK RTLVFHIGRA PKGERTEWIM HEYCMKGVSL DDALVVCRLR RNKEFNSWTS  180
QKPPEPNSAA ENHMVLQNGA TTSSGSPFAN GATTSSGSPA DWDNMVDFYL ADESGEKLLT  240
DMAETAKNLQ VHTEEDFFAD ILRDEIIKLD EAVMAGNTPN EVPTLESASM AIRVLPLPNM  300
IDKQMVSLLE ERPSQEKKGK ESNGTESLSS CFVGLYSIKT VNRARWDVII GVVALIVMLF  360
YLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-42141781172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013903m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400734.10.0NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLV4LID40.0V4LID4_EUTSA; Uncharacterized protein
STRINGXP_006400734.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]