PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10012087m | ||||||||
Common Name | EUTSA_v10012087mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9806.33 Da PI: 9.6581 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.6e-09 | 6 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 r++WT+eE+ l+ ++ ++G g W I + + R+ ++k++w++ + Thhalv10012087m 6 RNKWTAEEEGALLAGICKHGAGKWLNILEDPEfrpqlLYRSNIDLKDKWRNMK 58 79************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.506 | 1 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-14 | 3 | 60 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-12 | 4 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-4 | 5 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.10E-15 | 8 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MVGYRRNKWT AEEEGALLAG ICKHGAGKWL NILEDPEFRP QLLYRSNIDL KDKWRNMKIK 60 EKSMTQTLDS ASISISPCKD FAFSK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10012087m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305374.1 | 2e-31 | telomere repeat-binding factor 5 isoform X2 | ||||
Swissprot | F4IEY4 | 8e-23 | TRB5_ARATH; Telomere repeat-binding factor 5 | ||||
TrEMBL | V4KFR0 | 4e-57 | V4KFR0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392698.1 | 7e-58 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16580 | 8 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.1 | 3e-25 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10012087m |
Entrez Gene | 18011384 |
Publications ? help Back to Top | |||
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