PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10011987m | ||||||||
Common Name | EUTSA_v10011987mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 345aa MW: 38854.8 Da PI: 6.648 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 176 | 195 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Thhalv10011987m 176 FSCPLCFKTFNRYNNMQMHM 195 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.0003 | 260 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ Thhalv10011987m 260 FACRRCGKAFAVKGDWRTHEKNC 282 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 176 | 195 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 176 | 203 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 178 | 198 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.22E-6 | 246 | 280 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 247 | 280 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 260 | 280 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MSNPACSNLF TNGFDNTNFT YSSSLSYIYN SNNSFYYPNT TNPNNMAPTT TSTFPNSPPL 60 REALPLLSLS PSRHQEQQDQ HYFMDTDQIS SSNFLNDPHD VTVDLHLGLP NYGDGGSIES 120 YIAPDGTTEE QHHHDQGVEV TVDSHLHDDD DHGDLPRGHH YWIPTPAQIL IGPTQFSCPL 180 CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTGMLRL PCFCCAPGCK NNIDHPRAKP 240 LKDFRTLQTH YKRKHGSRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL 300 KDHVKAFGNG HVPCGIDSFG GDHDDNYEAA SDIEQQDDCN NNEC* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00197 | DAP | Transfer from AT1G51220 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10011987m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ311810 | 0.0 | AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393069.1 | 0.0 | zinc finger protein WIP5 | ||||
Swissprot | Q8W031 | 0.0 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | V4JXY1 | 0.0 | V4JXY1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393069.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51220.1 | 1e-179 | WIP domain protein 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10011987m |
Entrez Gene | 18010860 |
Publications ? help Back to Top | |||
---|---|---|---|
|