PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009374m
Common NameEUTSA_v10009374mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 343aa    MW: 39856.5 Da    PI: 4.0797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009374mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM851.4e-2641272128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      p+G rF P+   lv +yL++kv++++ e+   ik+++iy+ +Pw+L++ ++    e++wy+F++r ++++t    nr  + g+Wk+ gk ke+ 
  Thhalv10009374m   4 PVGTRFLPNGLGLVRRYLRNKVQRNESEF---IKTLNIYENDPWRLDHDTNPlyPENKWYYFVHRTTASRT-VPGNRESEGGTWKNNGK-KEIE 92 
                      89**********************99655...**************85332233678********998765.7889999*********9.8999 PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++ ++g k+++v+ k+ + + +ktdW m+ey+l
  Thhalv10009374m  93 DENKVVIGYKRSFVYLKKVNGNLVKTDWHMKEYSL 127
                      99**************9999999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-292143IPR003441NAC domain
PROSITE profilePS5100531.843145IPR003441NAC domain
PfamPF023653.4E-164127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MTYPVGTRFL PNGLGLVRRY LRNKVQRNES EFIKTLNIYE NDPWRLDHDT NPLYPENKWY  60
YFVHRTTASR TVPGNRESEG GTWKNNGKKE IEDENKVVIG YKRSFVYLKK VNGNLVKTDW  120
HMKEYSLFEN KTNSQEWVLC LIKDREENKD IVLPNNERQE EEEKEQEEEQ EQEADFANEI  180
NQHKQQEDQE QGQDAQIILP SPPLQSNDTN NVLMMSNQEP YGFDGVEDVM INIDEEQEQK  240
KEEEQEADFA NEINQHKQQQ DQEQDALNLL PSPPLQSDDT NNVLMMSNQE PYGFGGSEDE  300
IGTDELMESL DNDPVDLGMV DMDDLIQNLK ALASLNNNNN ES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009374m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415145.20.0NAC domain-containing protein 6
TrEMBLV4L1A10.0V4L1A1_EUTSA; Uncharacterized protein
STRINGXP_006415145.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1883757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.15e-28NAC domain containing protein 6