PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10009374m | ||||||||
Common Name | EUTSA_v10009374mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 39856.5 Da PI: 4.0797 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85 | 1.4e-26 | 4 | 127 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p+G rF P+ lv +yL++kv++++ e+ ik+++iy+ +Pw+L++ ++ e++wy+F++r ++++t nr + g+Wk+ gk ke+ Thhalv10009374m 4 PVGTRFLPNGLGLVRRYLRNKVQRNESEF---IKTLNIYENDPWRLDHDTNPlyPENKWYYFVHRTTASRT-VPGNRESEGGTWKNNGK-KEIE 92 89**********************99655...**************85332233678********998765.7889999*********9.8999 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ ++g k+++v+ k+ + + +ktdW m+ey+l Thhalv10009374m 93 DENKVVIGYKRSFVYLKKVNGNLVKTDWHMKEYSL 127 99**************9999999**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-29 | 2 | 143 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.84 | 3 | 145 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-16 | 4 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MTYPVGTRFL PNGLGLVRRY LRNKVQRNES EFIKTLNIYE NDPWRLDHDT NPLYPENKWY 60 YFVHRTTASR TVPGNRESEG GTWKNNGKKE IEDENKVVIG YKRSFVYLKK VNGNLVKTDW 120 HMKEYSLFEN KTNSQEWVLC LIKDREENKD IVLPNNERQE EEEKEQEEEQ EQEADFANEI 180 NQHKQQEDQE QGQDAQIILP SPPLQSNDTN NVLMMSNQEP YGFDGVEDVM INIDEEQEQK 240 KEEEQEADFA NEINQHKQQQ DQEQDALNLL PSPPLQSDDT NNVLMMSNQE PYGFGGSEDE 300 IGTDELMESL DNDPVDLGMV DMDDLIQNLK ALASLNNNNN ES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10009374m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415145.2 | 0.0 | NAC domain-containing protein 6 | ||||
TrEMBL | V4L1A1 | 0.0 | V4L1A1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415145.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18837 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03490.1 | 5e-28 | NAC domain containing protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10009374m |
Entrez Gene | 18991759 |