PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10005323m | ||||||||
Common Name | EUTSA_v10005323mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | C2H2 | ||||||||
Protein Properties | Length: 287aa MW: 31747.8 Da PI: 8.4195 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 11 | 32 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+ sF++ L H+r+H Thhalv10005323m 11 TCQVCKISFPNGRALGGHMRSH 32 6********************9 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00043 | 256 | 278 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC +C+++F + L H ++H Thhalv10005323m 256 YKCDICDRVFESGQALGGHKKVH 278 9***********99999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.559 | 10 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.47 | 10 | 32 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 12 | 32 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.7E-6 | 12 | 33 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.08E-7 | 205 | 278 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 207 | 234 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.4E-11 | 207 | 230 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 207 | 229 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 209 | 229 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-11 | 255 | 278 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.367 | 256 | 278 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 256 | 278 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 258 | 278 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MMYSLLKETK TCQVCKISFP NGRALGGHMR SHTQKLSASN AESATGSTIP SQQTSNKLGA 60 KFRRPLETVL MRSVHTSTEV GACPKPDLKT EEGGQRQITG KRKVVVDLED SSESDSCLTD 120 EEGALCLVAM SEGKRPENCQ KPKAIDRRLV STQKGKEKYE HVANLLTSNV GTIAEDHDDD 180 DDDDGGDVDD GDETYKVETE KKCKKKYKCD TCGKVLRSYQ ALGGHRTSHR NKRLKLCEKN 240 DQAVKPENGL VVRRHYKCDI CDRVFESGQA LGGHKKVHYL FLKPSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10005323m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394501.2 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | V4KPA2 | 0.0 | V4KPA2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394501.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14171 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61470.1 | 4e-31 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10005323m |
Entrez Gene | 18011549 |