PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002247m
Common NameEUTSA_v10002247mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 450aa    MW: 51128.8 Da    PI: 8.2296
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002247mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.19.5e-112643021854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      lF+   ++yp   +re LAk++gLt++qV++WF N R +
  Thhalv10002247m 264 LFQHflHPYPRDLDREMLAKQTGLTKSQVSNWFINARVR 302
                      5775569******************************87 PP
2BELL105.92.6e-34143213272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      r+elq+kkakL+ ++e+V++rYkqy++q+qt issFe  aglgsa++Yt++Al++iS++Fr++kd+i+ qi
  Thhalv10002247m 143 RKELQMKKAKLILMVEKVEQRYKQYHNQMQTTISSFEKSAGLGSANSYTHIALQTISKKFRAVKDMICLQI 213
                      689*****************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-4079211IPR006563POX domain
PfamPF075267.6E-3387209IPR006563POX domain
PROSITE profilePS5007111.969243306IPR001356Homeobox domain
CDDcd000862.75E-12246307No hitNo description
SMARTSM003891.8E-10246310IPR001356Homeobox domain
SuperFamilySSF466891.24E-17247314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27250312IPR009057Homeodomain-like
PfamPF059204.7E-17263302IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAAFFHGESE MREPSSDLFM MNLNPFSDPT TTINDHNHHL YNMCFGSQHH PRRVSKDEVG  60
LIEEGNSSIS TVSNRGVTQG FRVLDPTYLK AAQELLNENV NVGYGCRGAK QEQEMNKESV  120
ICGMNYGVGD INVSHKPGVA GCRKELQMKK AKLILMVEKV EQRYKQYHNQ MQTTISSFEK  180
SAGLGSANSY THIALQTISK KFRAVKDMIC LQIKHINKLL GEKECEGLNL AHEQHKQLGK  240
MTHNHWRTHR GLPETAVSIL RAWLFQHFLH PYPRDLDREM LAKQTGLTKS QVSNWFINAR  300
VRVWKPMVEE MYFEEMIFEE GRNRGNLNEY SNKGSSSKQP YYNTTSDESS NSILPVYHQG  360
YYENEISMPN SSSSCRLVTF KKQYKNQANL IHFHGGFENY HAVVGKDVSL SLGPHHSCDQ  420
TVNIIQFGST GNGTEISGIY PSLTYQIMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-17252310563Homeobox protein Meis2
3k2a_B2e-17252310563Homeobox protein Meis2
4xrm_A1e-17252310563Homeobox protein Meis2
4xrm_B1e-17252310563Homeobox protein Meis2
4xrs_A1e-17252309158Homeobox protein Meis1
4xrs_B1e-17252309158Homeobox protein Meis1
5bng_A1e-17252310159Homeobox protein Meis2
5bng_B1e-17252310159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002247m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015816.10.0BEL1-like homeodomain protein 5 isoform X2
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLV4MCD60.0V4MCD6_EUTSA; Uncharacterized protein
STRINGXP_006408680.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5