PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10001617m | ||||||||
Common Name | EUTSA_v10001617mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | YABBY | ||||||||
Protein Properties | Length: 230aa MW: 25820.6 Da PI: 7.3099 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 269.7 | 3.7e-83 | 22 | 190 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......lleelkveeenlksnvekeesa 92 e++CyvqC+fC+tilavsvP+tslfk+vtvrCG+Ct+llsvn ++ +l+a+++l+ +l ++ lleel+++ +n+++++++++ + Thhalv10001617m 22 LCEHLCYVQCKFCETILAVSVPYTSLFKTVTVRCGCCTNLLSVN--MRPVVLPASNQLQLQLGPHsymspqnLLEELRDAPSNMNMMMMNQHPN 113 679***************************************66..566789************99**************************** PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++++s+ ++ ++++e+p++p v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Thhalv10001617m 114 MNDIPSF-MDLHQQHEMPKAPTVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 190 ******6.5*******************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.6E-70 | 23 | 190 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.11E-8 | 134 | 183 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.9E-5 | 138 | 184 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSMSSPSSAV FSPEHLSPSE HLCEHLCYVQ CKFCETILAV SVPYTSLFKT VTVRCGCCTN 60 LLSVNMRPVV LPASNQLQLQ LGPHSYMSPQ NLLEELRDAP SNMNMMMMNQ HPNMNDIPSF 120 MDLHQQHEMP KAPTVNRPPE KRQRVPSAYN RFIKEEIQRI KAGNPDISHR EAFSAAAKNW 180 AHFPHIHFGL VPDNQPVKKT NMPQQEGDDN MVMKEGFYAP AANVGVSPY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10001617m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF074948 | 0.0 | AF074948.1 Arabidopsis thaliana FIL mRNA, complete cds. | |||
GenBank | AF087015 | 0.0 | AF087015.1 Arabidopsis thaliana abnormal floral organs protein (AFO) mRNA, complete cds. | |||
GenBank | AF136538 | 0.0 | AF136538.1 Arabidopsis thaliana YABBY1 (YABBY1) mRNA, complete cds. | |||
GenBank | BT026409 | 0.0 | BT026409.1 Arabidopsis thaliana At2g45190 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006397699.2 | 1e-172 | axial regulator YABBY 1, partial | ||||
Swissprot | O22152 | 1e-140 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | V4L9V9 | 1e-171 | V4L9V9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006397699.1 | 1e-171 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2217 | 28 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-136 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10001617m |
Entrez Gene | 18015491 |