PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001099m
Common NameEUTSA_v10001099mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WOX
Protein Properties Length: 319aa    MW: 35354.9 Da    PI: 6.0388
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001099mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1949109257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      ++R+++++eq+++Le+ F++ n +p+++e++++  +l    ++ e++V++WFqNr+ + k+
  Thhalv10001099m  49 KPRWNPKPEQIRILESIFNSgNVNPTRDEIQRIRIRLqeygQIGEANVFYWFQNRKSRAKH 109
                      89*****************99*************************************995 PP
2Wus_type_Homeobox108.93e-3548110264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG ++P+++eiqri+ +L+eyG+i+++NVfyWFQNrk+R ++k
    Thhalv10001099m  48 PKPRWNPKPEQIRILESIFNSGNVNPTRDEIQRIRIRLQEYGQIGEANVFYWFQNRKSRAKHK 110
                        579**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.45145110IPR001356Homeobox domain
SuperFamilySSF466896.42E-1446113IPR009057Homeodomain-like
SMARTSM003892.3E-947114IPR001356Homeobox domain
CDDcd000861.36E-1048110No hitNo description
Gene3DG3DSA:1.10.10.604.3E-849109IPR009057Homeodomain-like
PfamPF000465.8E-1749109IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSSNKNWPSM FKSKPCNNPH HEIDTPSYMH YSNCNVSSPF SSGRVPDPKP RWNPKPEQIR  60
ILESIFNSGN VNPTRDEIQR IRIRLQEYGQ IGEANVFYWF QNRKSRAKHK LRVLQKNPKV  120
SKKDKVITLN EADQCFGLVN HETGLFPGQN NELVLTEPAG FLFPVQNEPI AAQSGFGFGD  180
FVVPTVTEEG LSAVNNGVNF KITECLDKIP EITFYGGDGN GGGNCYSPIS APVTVPFTIN  240
QSQGEVILPS GGDVGDCISP KRLTVFVNDM PFQVVAGLFN VREAFGNDAV LIDSFGQQIL  300
TDEFGVTFQP LQNGGVYYL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001099m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398282.20.0WUSCHEL-related homeobox 8
SwissprotQ6X7J51e-168WOX8_ARATH; WUSCHEL-related homeobox 8
TrEMBLV4KPB10.0V4KPB1_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006398282.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142621619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.11e-171WUSCHEL related homeobox 8
Publications ? help Back to Top
  1. Xiao W, et al.
    DNA methylation is critical for Arabidopsis embryogenesis and seed viability.
    Plant Cell, 2006. 18(4): p. 805-14
    [PMID:16531498]
  2. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  3. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]