PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042194t1

Common Name

TCM_042194

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 538aa MW: 60212 Da PI: 4.3407

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042194t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	163.5	1.7e-50	179	537	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL + +a+ s+++ela++++ rl++ asp+g++++Rla+y++ AL ++ + ++s s++ aa+ +f++++P+ +f+h Thecc1EG042194t1 179 HLLKAYGDAMGSEQMELAEEIIRRLKDKASPTGNSLERLAFYLAVALDKQANY----------LGQES---SKNYEAAFMAFYQIFPYGRFAH 258 7888889999*************************************9998..........22222...3445566778******** PP GRAS 96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.va 183 +taN+aIlea+ + ++vHi+Df+i++G+QWp+L++aL + g +lR+T ++ e++ + ++ eet+++L + A ++g+++e + + ++ Thecc1EG042194t1 259 FTANSAILEAIPADaTAVHIVDFEIGNGIQWPPLIEALGRK--GLRMLRLTSIKWGEEDgscNPTTFEETKKQLWRHAMNFGLRLEVEEMdIE 349 *******888799*****************985..999****9888889999*********************9444 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.vvvvveqe..adh..nsesFlerflealeyysalfdsl 271 +++++ + r ++ E la n+++ l ++ ++ + + +++Lk+ k l ++ v+ + a+ + sF f + y+ al++s+ Thecc1EG042194t1 350 GLVSEIKKARVRGRKSEWLAFNCMVGLPHMG--KGRSVVHVEHFLKTAKALISNeGVIAFGNGigAEKwiEYRSFSSFFEGQMVYCHALLESM 440 488999999999999***********8..444444589****866525555555422222235669*************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlg 361 e+ + e+ri +E ++ ++++++ +++ e + r+ l+e GF+p +ls +++ +a+ l+++ +s y v e+++++vlg Thecc1EG042194t1 441 EQF--QLLEARIAMECLFVVPHLSSLSNAQQWEETVREC------GSLSELGFQPQRLSRENYLEARELVSEGESS-YWVRtdgEDNNQMVLG 524 999..567**********99998888888333333......5699*******************9966.888767888*** PP GRAS 362 WkdrpLvsvSaWr 374 ++ pLv vS+Wr Thecc1EG042194t1 525 YMGAPLVRVSSWR 537 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	27.453	151	515	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.9E-48	179	537	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MTPILFAIEM MEMEFNPWWP IYNPIDSQLE EVALYLAEMD AQVSSFEFST SSVSIEDFSD 60 VSSSSALLSS TLYGSQTHGY PFSGNHLLGI LPREQCLPSV DEGDAPSNDQ FLLDGGENFS 120 EWMASDSSIS SQQIFTEDVG SQNLSPISRE VSVDVPSIQA SLVLPAEYVE VDDQLVILHL 180 LKAYGDAMGS EQMELAEEII RRLKDKASPT GNSLERLAFY LAVALDKQAN YLGQESSKNY 240 EAAFMAFYQI FPYGRFAHFT ANSAILEAIP ADATAVHIVD FEIGNGIQWP PLIEALGRKG 300 LRMLRLTSIK WGEEDGSCNP TTFEETKKQL WRHAMNFGLR LEVEEMDIEG LVSEIKKARV 360 RGRKSEWLAF NCMVGLPHMG KGRSVVHVEH FLKTAKALIS NEGVIAFGNG IGAEKWIEYR 420 SFSSFFEGQM VYCHALLESM EQFQLLEARI AMECLFVVPH LSSLSNAQQW EETVRECGSL 480 SELGFQPQRL SRENYLEARE LVSEGESSYW VRTDGEDNNQ MVLGYMGAPL VRVSSWR*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MTPILFAIEM MEMEFNPWWP IYNPIDSQLE EVALYLAEMD AQVSSFEFST SSVSIEDFSD  60
VSSSSALLSS TLYGSQTHGY PFSGNHLLGI LPREQCLPSV DEGDAPSNDQ FLLDGGENFS  120
EWMASDSSIS SQQIFTEDVG SQNLSPISRE VSVDVPSIQA SLVLPAEYVE VDDQLVILHL  180
LKAYGDAMGS EQMELAEEII RRLKDKASPT GNSLERLAFY LAVALDKQAN YLGQESSKNY  240
EAAFMAFYQI FPYGRFAHFT ANSAILEAIP ADATAVHIVD FEIGNGIQWP PLIEALGRKG  300
LRMLRLTSIK WGEEDGSCNP TTFEETKKQL WRHAMNFGLR LEVEEMDIEG LVSEIKKARV  360
RGRKSEWLAF NCMVGLPHMG KGRSVVHVEH FLKTAKALIS NEGVIAFGNG IGAEKWIEYR  420
SFSSFFEGQM VYCHALLESM EQFQLLEARI AMECLFVVPH LSSLSNAQQW EETVRECGSL  480
SELGFQPQRL SRENYLEARE LVSEGESSYW VRTDGEDNNQ MVLGYMGAPL VRVSSWR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-16	195	537	21	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982609.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein
TrEMBL	A0A061GZ26	0.0	A0A061GZ26_THECC; GRAS family transcription factor, putative
STRING	EOY34567	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19272	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-23	RGA-like 2

Link Out ? help Back to Top
Phytozome	Thecc1EG042194t1
Entrez Gene	18591000

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]