PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042009t6
Common NameTCM_042009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 883aa    MW: 99607.5 Da    PI: 6.7111
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042009t6genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.82.6e-1663136290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +Y+eYA+++GFs +  + ++sk +g+i++r+fvC +eg ++++ ++              C+a l+++++  +kw+vtk+++eH+H+++
  Thecc1EG042009t6  63 YYDEYARRMGFSSKAGQLTRSKIDGTIVSREFVCGREGLKRRSADS--------------CDALLRIELK-GDKWVVTKFVKEHSHSMV 136
                       8**************************************9998877..............**********.9**************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-1363136IPR004330FAR1 DNA binding domain
PfamPF105511.0E-26275367IPR018289MULE transposase domain
PROSITE profilePS5096611.078553589IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-10555587IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MDVHVIDAEE GLGHRGMSDD GDAEPNEGGE ANNAENSLAH DEDGISEPYV AMEFNAEDAA  60
KTYYDEYARR MGFSSKAGQL TRSKIDGTIV SREFVCGREG LKRRSADSCD ALLRIELKGD  120
KWVVTKFVKE HSHSMVSPSK VHYLRPRRHF AGAAKTMADS YQGVGIVPSG VMYVSMDGNR  180
ASMDANNRGL RNTPPAEANR SVKNIGTPNY AVRPVNRKRT LGRDAQNLLD YFKKMQAENP  240
GFFYAIQLDD DNRMANVFWA DARSRTAYMH FGDAVTLDTS YRVNQYRVPF APFTGVNHHG  300
QTILFGCALL LDDSEASFVW LFKTFLTAMN DRQPVSLITD LDRAIQTAVS QVFPGVRHCI  360
NKWHVLREGP EKLAHVCHVH PNFQVELYNC INLTETIEEF ELSWSSILEK YDLRGHDWLQ  420
SLYNSRAQWV PVYFRDSFFA AISPNQGFDG SFFDGYVNQQ TTIPMFFRQY ERAIENWFEK  480
EIEADFDTIC TTPVLRTPSP MEKQAANLFT RKIFTKFQEE LVETFVYTAN RIEGDAAIST  540
FRVAKFEDDN KAYIVTLNYP EMRANCSCQM FEYSGILCRH VLTVFTVTNV LTLPSHYILK  600
RWTRNAKSVV ATDERSSELL AQESLTVRYN SLCREAIKYA EEGAIATETY NVAMGTLKEG  660
GKKISVVKKN VAKVAPPSSL ASGAAYDDRK SSTSAPDTAP LLWPRQDEIT RRFNLNDTGA  720
PAQSVSDLNL PRMAPVSLHR DDGHPDNMPV LPCLKSMTWV MENKNSTPGN RVAVINLKLQ  780
DYSKNPSAEM EVKFQLSRVT LEPMLRSMAY ISEQLSTPAN RVAVINLKLQ DTETTTGESE  840
VKFQVSRDTL GAMLRSMAYI REQLSNVQTE PQAEPLLKKH RK*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016664.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_017982819.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A061GXZ00.0A0A061GXZ0_THECC; FAR1-related sequence 3 isoform 6
STRINGEOY342830.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]