PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042009t6 | ||||||||
Common Name | TCM_042009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | FAR1 | ||||||||
Protein Properties | Length: 883aa MW: 99607.5 Da PI: 6.7111 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.8 | 2.6e-16 | 63 | 136 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA+++GFs + + ++sk +g+i++r+fvC +eg ++++ ++ C+a l+++++ +kw+vtk+++eH+H+++ Thecc1EG042009t6 63 YYDEYARRMGFSSKAGQLTRSKIDGTIVSREFVCGREGLKRRSADS--------------CDALLRIELK-GDKWVVTKFVKEHSHSMV 136 8**************************************9998877..............**********.9**************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.5E-13 | 63 | 136 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-26 | 275 | 367 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.078 | 553 | 589 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.8E-10 | 555 | 587 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.8E-8 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 883 aa Download sequence Send to blast |
MDVHVIDAEE GLGHRGMSDD GDAEPNEGGE ANNAENSLAH DEDGISEPYV AMEFNAEDAA 60 KTYYDEYARR MGFSSKAGQL TRSKIDGTIV SREFVCGREG LKRRSADSCD ALLRIELKGD 120 KWVVTKFVKE HSHSMVSPSK VHYLRPRRHF AGAAKTMADS YQGVGIVPSG VMYVSMDGNR 180 ASMDANNRGL RNTPPAEANR SVKNIGTPNY AVRPVNRKRT LGRDAQNLLD YFKKMQAENP 240 GFFYAIQLDD DNRMANVFWA DARSRTAYMH FGDAVTLDTS YRVNQYRVPF APFTGVNHHG 300 QTILFGCALL LDDSEASFVW LFKTFLTAMN DRQPVSLITD LDRAIQTAVS QVFPGVRHCI 360 NKWHVLREGP EKLAHVCHVH PNFQVELYNC INLTETIEEF ELSWSSILEK YDLRGHDWLQ 420 SLYNSRAQWV PVYFRDSFFA AISPNQGFDG SFFDGYVNQQ TTIPMFFRQY ERAIENWFEK 480 EIEADFDTIC TTPVLRTPSP MEKQAANLFT RKIFTKFQEE LVETFVYTAN RIEGDAAIST 540 FRVAKFEDDN KAYIVTLNYP EMRANCSCQM FEYSGILCRH VLTVFTVTNV LTLPSHYILK 600 RWTRNAKSVV ATDERSSELL AQESLTVRYN SLCREAIKYA EEGAIATETY NVAMGTLKEG 660 GKKISVVKKN VAKVAPPSSL ASGAAYDDRK SSTSAPDTAP LLWPRQDEIT RRFNLNDTGA 720 PAQSVSDLNL PRMAPVSLHR DDGHPDNMPV LPCLKSMTWV MENKNSTPGN RVAVINLKLQ 780 DYSKNPSAEM EVKFQLSRVT LEPMLRSMAY ISEQLSTPAN RVAVINLKLQ DTETTTGESE 840 VKFQVSRDTL GAMLRSMAYI REQLSNVQTE PQAEPLLKKH RK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007016664.2 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_017982819.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A061GXZ0 | 0.0 | A0A061GXZ0_THECC; FAR1-related sequence 3 isoform 6 | ||||
STRING | EOY34283 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042009t6 |
Entrez Gene | 18590838 |
Publications ? help Back to Top | |||
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