PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG026144t1 | ||||||||
Common Name | TCM_026144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ZF-HD | ||||||||
Protein Properties | Length: 177aa MW: 20864.8 Da PI: 9.9894 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 85.4 | 6e-27 | 74 | 131 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +++Yk+C++NhA +lG ++vDGCgEf+p+ ++ + l C ACgCHRnFHR+e ++ Thecc1EG026144t1 74 NIKYKDCMRNHAPQLGVNVVDGCGEFTPKGRTSeTRNGNLDCEACGCHRNFHRKEATK 131 689*************************96665588999***************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.2E-23 | 75 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-13 | 75 | 138 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.0E-23 | 76 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.268 | 77 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MQRIETMRQV EAYNYKAKRL PKHLDKGNQN LAFVSLYTFS FSTTFSLFMA NNFLERKPFK 60 PPFEIIERKT KTINIKYKDC MRNHAPQLGV NVVDGCGEFT PKGRTSETRN GNLDCEACGC 120 HRNFHRKEAT KKISLTFIEN EQVNWFRFHS RPFEMNNEQK QTENEEMNER IKKPKN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022719697.1 | 1e-51 | mini zinc finger protein 1-like | ||||
TrEMBL | A0A061F2D1 | 1e-129 | A0A061F2D1_THECC; Uncharacterized protein | ||||
STRING | EOY10852 | 1e-129 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22155 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 1e-18 | homeobox protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG026144t1 |
Entrez Gene | 18600038 |
Publications ? help Back to Top | |||
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