PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021310t2
Common NameTCM_021310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 757aa    MW: 86356.1 Da    PI: 6.4421
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021310t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.11.9e-2059152190
              FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                       +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k++r+r+++r+gC a++++ k+      +w+vt +++ HnHel
  Thecc1EG021310t2  59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKLSEDGKTQRNRKSSRCGCLASMRIVKRAdfdVPEWRVTGFSNVHNHEL 151
                       6***************9998874556679*******************9*******************98887676789*************9 PP

              FAR1  90 a 90 
                        
  Thecc1EG021310t2 152 L 152
                       6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1759152IPR004330FAR1 DNA binding domain
PfamPF105512.7E-22275366IPR018289MULE transposase domain
PROSITE profilePS509669.582554587IPR007527Zinc finger, SWIM-type
PfamPF044344.5E-7560585IPR007527Zinc finger, SWIM-type
SMARTSM005759.4E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MSEGTSMVME SSENGTDLSQ DDTGTIVEMP EDTILSQQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKT QRNRKSSRCG  120
CLASMRIVKR ADFDVPEWRV TGFSNVHNHE LLKANEVRLL PAYCTITPDD KARICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDYDAIDLIA MCKKLKDENP  240
HFQYDFKLDG HNRLEHIAWS YASSVQLYET FGDAVVFDTT HRMDSYDMLL GIWVGVDNYG  300
MTSFFGCVLL RDENMQSFSW ALKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETKHAF  360
CIWHIISKFS DWFSFLLGSR YDDWKSDFYQ LYTLELVEDF EEEWRDMVDK NGLHENKHII  420
SLYALRTFWA LPFLRPYFFA GLTSSCQSET INAFIQRILS AQSQQDRFVE QVAEIVEFND  480
RAGSKQKMQR KLQKVCLKTG SPIESHAATV LTPYAFGKLQ EELLLAPQYA SFLVDEGCFH  540
VKHHSQMDGG CKVLWVPCEE HISCSCHHFE FSGILCRHVL RVLSSNNCFH IPEQYLPNRW  600
RINSSSSTNL LRNATREHSE KIQLLESMAS TLIAESIETE ERLDVACDQT AMVLSRIKDL  660
PRPTHSANDI VYNCPSDLIL PEVEDTDGIV QSFTIGTSHE SLTSGKMKDR RSREGIDIAR  720
KRRHFSGSCC GQFGHDSSDC PMLGGDNLNG DALGYL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035727.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_017975958.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_017975959.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A061EQQ00.0A0A061EQQ0_THECC; Far1-related sequence 11 isoform 1
STRINGEOY066540.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]